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Traceback (most recent call last):
File "/opt/conda/envs/py3-env/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"__main__", mod_spec)
File "/opt/conda/envs/py3-env/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/peddy/__main__.py", line 14, in <module>
sys.exit(cli())
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/peddy/cli.py", line 209, in peddy
in ("ped_check", "het_check", "sex_check")]):
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/peddy/cli.py", line 43, in run
prefix=prefix, **kwargs)
File "/opt/conda/envs/py3-env/lib/python3.7/site-packages/peddy/peddy.py", line 866, in het_check
sites, min_depth=min_depth)
File "cyvcf2/cyvcf2.pyx", line 76, in cyvcf2.cyvcf2.par_het
File "cyvcf2/cyvcf2.pyx", line 743, in cyvcf2.cyvcf2.VCF._finish_het
IndexError: index 0 is out of bounds for axis 0 with size 0
the interesting part of the pipeline run has completed at this point, would just be nice to have a cleaner finish for dry runs.
The text was updated successfully, but these errors were encountered:
with the following error, as mentioned by Viktor:
the interesting part of the pipeline run has completed at this point, would just be nice to have a cleaner finish for dry runs.
The text was updated successfully, but these errors were encountered: