-Sex is not that well balanced; all but one of the adults is male
+Sex is not that well balanced
There is a batch confound: The stages were run in different batches (except 17.5 was split in two)
Mapped reads varies with the batches (SeqRun)
diff --git a/lect03-eda/lect03-eda.qmd b/lect03-eda/lect03-eda.qmd
index 01f95ef..994f6f6 100644
--- a/lect03-eda/lect03-eda.qmd
+++ b/lect03-eda/lect03-eda.qmd
@@ -732,7 +732,7 @@ ggpairs(d[sample(nrow(d), n),6:11],
::: columns
::: {.column width="30%"}
-- Sex is not that well balanced; all but one of the adults is male
+- Sex is not that well balanced
- There is a batch confound: The stages were run in different batches (except 17.5 was split in two)
@@ -743,7 +743,7 @@ ggpairs(d[sample(nrow(d), n),6:11],
```{r}
#| echo: FALSE
#| fig.width: 12
-#| fig.height: 7
+#| fig.height: 9
#| message: FALSE
m %>% select(-Number, -Sample) %>%
mutate(DPC = as.factor(DPC)) %>%
diff --git a/lect03-eda/lect03-eda_files/figure-revealjs/unnamed-chunk-21-1.png b/lect03-eda/lect03-eda_files/figure-revealjs/unnamed-chunk-21-1.png
index 09a702e..3a57fc2 100644
Binary files a/lect03-eda/lect03-eda_files/figure-revealjs/unnamed-chunk-21-1.png and b/lect03-eda/lect03-eda_files/figure-revealjs/unnamed-chunk-21-1.png differ