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VCF input file without GT in AnnotSV causes variantconvert to bug #35

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lgmgeo opened this issue Jun 3, 2024 · 0 comments
Open

VCF input file without GT in AnnotSV causes variantconvert to bug #35

lgmgeo opened this issue Jun 3, 2024 · 0 comments

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@lgmgeo
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lgmgeo commented Jun 3, 2024

Some users give to AnnotSV a VCF without GT as input file. This causes variantconvert to bug.
Would it be possible to assign a default genotype (as the one used with a BED input file)?
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@lgmgeo