toRun.json

{
    "add_gaussian_noise" : 2,
    "attach_patient_layer_to_cnn_output" : true,
    "attach_seizure_type_to_seizure_detect" : false,
    "balance_valid_dataset" : false,
    "batch_size" : 128,
    "change_batch_size_over_time" : null,
    "cnn_dropout" : 0,
    "combined_split" : null,
    "conv_spatial_filter" : [
        4,
        4
    ],
    "conv_temporal_filter" : [
        4,
        1
    ],
    "early_stopping_on" : "val_binary_accuracy",
    "epochs" : 100,
    "fit_generator_verbosity" : 1,
    "hyperopt_run" : false,
    "imbalanced_resampler" : "rul",
    "include_montage_channels" : false,
    "include_seizure_type" : true,
    "linear_dropout" : 0.5,
    "lr" : 0.0005,
    "lr_decay" : 0.9,
    "lstm_h" : 64,
    "lstm_return_sequence" : true,
    "make_model_in_parallel" : false,
    "max_bckg_samps_per_file" : 50,
    "max_bckg_samps_per_file_test" : -1,
    "max_pool_size" : [
        2,
        1
    ],
    "max_pool_size_time" : [
        2,
        1
    ],
    "max_pool_stride" : [
        2,
        1
    ],
    "max_samples" : null,
    "min_seizure_weight" : 10,
    "mode" : "DETECT",
    "model_type" : null,
    "n_process" : 20,
    "num_conv_temporal_layers" : 0,
    "num_filters" : 4,
    "num_gpus" : 1,
    "num_layers" : 7,
    "num_lin_layer" : 0,
    "num_post_cnn_layers" : 2,
    "num_post_lin_h" : 200,
    "num_seconds" : 4,
    "num_temporal_filter" : 1,
    "optimizer_name" : "adam",
    "patience" : 20,
    "patient_weight" : -1,
    "post_cooldown" : null,
    "pre_cooldown" : 4,
    "pre_layer_h" : 64,
    "precache" : true,
    "random_channel_ordering" : [
        1,
        2,
        17,
        5,
        13,
        8,
        9,
        15,
        18,
        6,
        20,
        12,
        4,
        11,
        7,
        14,
        16,
        3,
        19,
        0,
        10
    ],
    "random_rearrange_each_batch" : true,
    "random_rescale" : false,
    "randomly_reorder_channels" : false,
    "reduce_lr_on_plateau" : false,
    "ref" : "01_tcp_ar",
    "regenerate_data" : false,
    "remove_outlier_by_std_thresh" : 100,
    "rescale_factor" : 2,
    "sample_time" : 4,
    "seizure_classes_to_use" : null,
    "seizure_classification_only" : false,
    "seizure_weight" : 1,
    "seizure_weight_decay" : null,
    "separate_out_mlp" : false,
    "separate_seizure_classification_weight" : 0,
    "session_instead_patient" : true,
    "steps_per_epoch" : null,
    "test_patient_model_after_train" : true,
    "test_pkl" : "/n/scratch2/ms994/test_multiple_labels_sessions_seizure_data_4.pkl",
    "train_patient_model_after_train" : true,
    "train_pkl" : "/n/scratch2/ms994/train_multiple_labels_sessions_seizure_data_4.pkl",
    "update_seizure_class_weights" : false,
    "use_batch_normalization" : true,
    "use_filtering" : true,
    "use_homeoschedastic" : false,
    "use_inception" : false,
    "use_lstm" : true,
    "use_montage_channels_instead_of_montage_num" : false,
    "use_standard_scaler" : false,
    "use_time_layers_first" : true,
    "valid_patient_model_after_train" : true,
    "valid_pkl" : "/n/scratch2/ms994/valid_multiple_labels_sessions_seizure_data_4.pkl",
    "validation_f1_score_type" : null,
    "zero_center_over_channel" : false,
    "zero_center_over_time" : true
}