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Make ABM infection states purely symptomatic states and provide interface to link infectivity and state transitions #1081

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jubicker opened this issue Jul 29, 2024 · 0 comments · May be fixed by #1107
Open
2 tasks done

Make ABM infection states purely symptomatic states and provide interface to link infectivity and state transitions #1081

jubicker opened this issue Jul 29, 2024 · 0 comments · May be fixed by #1107
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@jubicker
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class::discussion Used for discussions on software and model . class::improvement Cleanup that doesn't affect functionality loc::backend This issue concerns the C++ backend implementation. model::abm This issue concerns any kind of agent-based model.

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Motivation / Current Behaviour

Currently infectivity and infection states a pseudo-connected. The state transitions are independent of infectivity and infectivity does not depend on the infection state if an agent is infected, but it is zero for recovered (and susceptible) agents. That means that an agent's infectivity can jump from peak infectivity to zero within one hour if the agent recovers.

Enhancement description

We want to make the infection states purely symptomatic state i.e. decouple infectivity from them. The connection of state transitions and infectivity should be subject to user input by providing an interface for that as well as default implementations.

Additional context

No response

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  • Attached labels, especially loc:: or model:: labels.
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@jubicker jubicker added class::discussion Used for discussions on software and model . loc::backend This issue concerns the C++ backend implementation. model::abm This issue concerns any kind of agent-based model. class::improvement Cleanup that doesn't affect functionality labels Jul 29, 2024
@jubicker jubicker self-assigned this Jul 29, 2024
@jubicker jubicker moved this from Product Backlog 📕 to Development 🧑‍💻👩‍💻 in MEmilio: Agent-Based-Model Development Jul 29, 2024
@jubicker jubicker linked a pull request Aug 13, 2024 that will close this issue
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@jubicker jubicker linked a pull request Aug 13, 2024 that will close this issue
1081 rework ABM state transitions #1107
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@DavidKerkmann DavidKerkmann mentioned this issue Dec 6, 2024
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class::discussion Used for discussions on software and model . class::improvement Cleanup that doesn't affect functionality loc::backend This issue concerns the C++ backend implementation. model::abm This issue concerns any kind of agent-based model.
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MEmilio: Agent-Based-Model Development
Status: Development 🧑‍💻👩‍💻
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1081 rework ABM state transitions SciCompMod/memilio
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@jubicker