DESCRIPTION

Package: ypssc
Type: Package
Title: Yeast-Proteome Secondary-Structure Calculator
Description: An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>)
    which is specifically designed to analyze the results of bottom-up-proteomics that is
    primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>).
    This tool is designed to process a large number of yeast peptides that produced as a
    results of whole yeast cell-proteome digestion and provide a coherent picture of
    secondary structure of proteins.
Version: 1.1.0.9000
Authors@R: c(
    person(given = "Sajad",
        family   = "Tasharofi",
        role     = c("aut", "cph"),
        email    = "sajad.tasharofi@uta.edu"),
    person(given = "Shashank",
        family   = "Kumbhare",
        role     = c("aut", "cre", "cph"),
        email    = "shashank.kumbhare@mavs.uta.edu"),
    person(given = "Bent",
        family   = "Petersen",
        role     = c("aut"),
        email    = "bent.petersen@sund.ku.dk"),
    person(given = "Morteza",
        family   = "Khaledi",
        role     = c("aut"),
        email    = "morteza.khaledi@uta.edu"),
    person(given = "Amir",
        family   = "Shahmoradi",
        role     = c("aut"),
        email    = "a.shahmoradi@uta.edu") )
License: GPL (>= 3)
Encoding: UTF-8
StagedInstall: yes
RoxygenNote: 7.1.2
Roxygen: list(markdown = TRUE)
Suggests:
    rmarkdown,
    testthat (>= 3.0.0)
Imports:
    spelling,
    dplyr,
    readxl,
    stringr,
    eulerr,
    Peptides,
    utils,
    svDialogs,
    tcltk
Depends:
    R (>= 2.10)
Config/testthat/edition: 3