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Test coverage has some gaps, and at least one bug has been hidden by it (#235)
electrostatics.jl
*(a::Float64, ews::GGEwaldSum)
energy_min.jl
needs_rotations(molecule)
has_charges(molecule) && has_charges(xtal)
isa(molecule, Molecule{Cart})
energy_utilities.jl
PotentialEnergy()
/(energy::PotentialEnergy, a::Int)
std(energies::Array{PotentialEnergy, 1})
verbose && ! isapprox(u.vdw, v.vdw, atol=atol)
SystemPotentialEnergy()
/(u::SystemPotentialEnergy, a::Int)
std(us::Array{SystemPotentialEnergy, 1})
! isapprox(u.gh, v.gh, verbose=verbose, atol=atol)
! isapprox(u.gg, v.gg, verbose=verbose, atol=atol)
eos.jl
nrow(df) == 0
show(io::IO, fluid::PengRobinsonFluid)
show(io::IO, fluid::VdWFluid)
forcefield.jl
broadcastable(ljff::LJForceField)
! (lowercase(mixing_rules) in ["lorentz-berthelot", "kong", "geometric"])
atom_species in keys(ljff.pure_σ)
lowercase(mixing_rules) == "kong"
lowercase(mixing_rules) == "geometric"
replication_factors(crystal::Crystal, ljforcefield::LJForceField)
gcmc.jl
GCMCstats(nb_species::Int)
+(s1::GCMCstats, s2::GCMCstats)
sum(gcmc_stats::Array{GCMCstats, 1})
print(gcmc_stats::GCMCstats)
mean_stderr_n_U(gcmc_stats::Array{GCMCstats, 1})
mean_stderr_n_U(gcmc_stats::Array{GCMCstats, 1})(...)
μVT_sim(...)
print_results(results::Dict; print_title::Bool=true)
pretty_print(...)
stepwise_adsorption_isotherm(...)
adsorption_isotherm(...)
generic_rotations.jl
rotation_matrix(θ::Float64, u::Array{Float64, 1}; assume_unit_vector::Bool=false)
rotation_matrix(θ::Float64, dim::Int)
grid.jl
update_density!(grid::Grid, molecules::Array{Molecule{Cart}, 1}, species::Symbol)
! occursin(".cube", filename)
length_units == "Bohr"
! has_units
! (number_of_atoms == 0)
k % 6 == 0
! (units in [:kJ_mol, :K])
rotations_required & isnan(temperature)
rotations_required
verbose
Edge(t, s) in edges(graph)
henry.jl
henry_coefficient(...)
_conduct_Widom_insertions(...)
henry_result_savename(...)
isotherm_fitting.jl
_guess(df::DataFrame, pressure_col_name::Symbol, loading_col_name::Symbol, model::Symbol)
fit_adsorption_isotherm(...)
mc_helpers.jl
adjust!(adaptive_δ::AdaptiveTranslationStepSize)
molecule.jl
(! neutral(molecule.charges)) && check_neutrality
net_charge(molecule::Molecule)
write_xyz(box::Box, molecules::Array{Array{Molecule{Frac}, 1}, 1}, xyz_file::IOStream)
i in 1:molecule.charges.n
inside(molecule::Molecule{Cart}, box::Box)
isa(atoms.coords, Frac)
write_xyz(...)
???
vdw_energetics.jl
vdw_energy(atoms_i::Atoms{Cart}, atoms_j::Atoms{Cart}, box::Box, ljff::LJForceField)
vdw_energy(atoms_i::Atoms{Frac}, atoms_j::Atoms{Cart}, box::Box, ljff::LJForceField)
r² < R²_OVERLAP
total_vdw_energy(crystal::Crystal, molecules::Array{Array{Molecule{Frac}, 1}, 1}, ljff::LJForceField)
total_vdw_energy(molecules::Array{Array{Molecule{Frac}, 1}, 1}, ljff::LJForceField, box::Box)
The text was updated successfully, but these errors were encountered:
The codecov integration also probably needs some tweaking, because only pushes to master seem to get updated
master
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Test coverage has some gaps, and at least one bug has been hidden by it (#235)
electrostatics.jl
*(a::Float64, ews::GGEwaldSum)
energy_min.jl
needs_rotations(molecule)
has_charges(molecule) && has_charges(xtal)
isa(molecule, Molecule{Cart})
energy_utilities.jl
PotentialEnergy()
/(energy::PotentialEnergy, a::Int)
std(energies::Array{PotentialEnergy, 1})
verbose && ! isapprox(u.vdw, v.vdw, atol=atol)
SystemPotentialEnergy()
/(u::SystemPotentialEnergy, a::Int)
std(us::Array{SystemPotentialEnergy, 1})
! isapprox(u.gh, v.gh, verbose=verbose, atol=atol)
! isapprox(u.gg, v.gg, verbose=verbose, atol=atol)
eos.jl
nrow(df) == 0
show(io::IO, fluid::PengRobinsonFluid)
nrow(df) == 0
show(io::IO, fluid::VdWFluid)
forcefield.jl
broadcastable(ljff::LJForceField)
! (lowercase(mixing_rules) in ["lorentz-berthelot", "kong", "geometric"])
atom_species in keys(ljff.pure_σ)
lowercase(mixing_rules) == "kong"
lowercase(mixing_rules) == "geometric"
replication_factors(crystal::Crystal, ljforcefield::LJForceField)
gcmc.jl
GCMCstats(nb_species::Int)
+(s1::GCMCstats, s2::GCMCstats)
sum(gcmc_stats::Array{GCMCstats, 1})
print(gcmc_stats::GCMCstats)
mean_stderr_n_U(gcmc_stats::Array{GCMCstats, 1})
mean_stderr_n_U(gcmc_stats::Array{GCMCstats, 1})(...)
μVT_sim(...)
μVT_sim(...)
print_results(results::Dict; print_title::Bool=true)
pretty_print(...)
stepwise_adsorption_isotherm(...)
stepwise_adsorption_isotherm(...)
adsorption_isotherm(...)
adsorption_isotherm(...)
generic_rotations.jl
rotation_matrix(θ::Float64, u::Array{Float64, 1}; assume_unit_vector::Bool=false)
rotation_matrix(θ::Float64, dim::Int)
grid.jl
update_density!(grid::Grid, molecules::Array{Molecule{Cart}, 1}, species::Symbol)
! occursin(".cube", filename)
length_units == "Bohr"
! occursin(".cube", filename)
! has_units
! (number_of_atoms == 0)
k % 6 == 0
! (units in [:kJ_mol, :K])
rotations_required & isnan(temperature)
rotations_required
rotations_required
verbose
verbose
verbose
Edge(t, s) in edges(graph)
verbose
verbose
verbose
henry.jl
henry_coefficient(...)
_conduct_Widom_insertions(...)
henry_result_savename(...)
isotherm_fitting.jl
_guess(df::DataFrame, pressure_col_name::Symbol, loading_col_name::Symbol, model::Symbol)
fit_adsorption_isotherm(...)
mc_helpers.jl
adjust!(adaptive_δ::AdaptiveTranslationStepSize)
molecule.jl
(! neutral(molecule.charges)) && check_neutrality
net_charge(molecule::Molecule)
write_xyz(box::Box, molecules::Array{Array{Molecule{Frac}, 1}, 1}, xyz_file::IOStream)
i in 1:molecule.charges.n
inside(molecule::Molecule{Cart}, box::Box)
isa(atoms.coords, Frac)
write_xyz(...)
write_xyz(...)
???
vdw_energetics.jl
vdw_energy(atoms_i::Atoms{Cart}, atoms_j::Atoms{Cart}, box::Box, ljff::LJForceField)
vdw_energy(atoms_i::Atoms{Frac}, atoms_j::Atoms{Cart}, box::Box, ljff::LJForceField)
r² < R²_OVERLAP
total_vdw_energy(crystal::Crystal, molecules::Array{Array{Molecule{Frac}, 1}, 1}, ljff::LJForceField)
total_vdw_energy(molecules::Array{Array{Molecule{Frac}, 1}, 1}, ljff::LJForceField, box::Box)
The text was updated successfully, but these errors were encountered: