diff --git a/.github/workflows/publish-package.yml b/.github/workflows/publish-package.yml index 29e8d09..e6be78b 100644 --- a/.github/workflows/publish-package.yml +++ b/.github/workflows/publish-package.yml @@ -16,7 +16,7 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install poetry + pip install poetry==1.7.1 - name: Build and publish env: PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }} diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml index 35f31f3..792ab12 100644 --- a/.github/workflows/python-package.yml +++ b/.github/workflows/python-package.yml @@ -15,7 +15,7 @@ jobs: runs-on: ubuntu-latest strategy: matrix: - python-version: [3.8, 3.9, "3.10", "3.11"] + python-version: ["3.9", "3.10", "3.11"] steps: - uses: actions/checkout@v2 diff --git a/mypy.ini b/mypy.ini deleted file mode 100644 index 72bb039..0000000 --- a/mypy.ini +++ /dev/null @@ -1,9 +0,0 @@ -[mypy] -check_untyped_defs = True -no_implicit_optional = True - -[mypy-nltk] -ignore_missing_imports = True - -[mypy-nltk.*] -ignore_missing_imports = True \ No newline at end of file diff --git a/poetry.lock b/poetry.lock index b92d077..d6c876d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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"^3.8" -content-hash = "bf1a4e82192eeb489ed55808677f021fa7c1a6bba450d82609a13f394e6482f5" +python-versions = "^3.9" +content-hash = "53e9d8679e6e3bad3d4d6dd9ffbd2940046aed4bdf11d715ee4e3f0df20f6c32" diff --git a/pyproject.toml b/pyproject.toml index 3501121..4eadbc8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,12 +3,14 @@ name = "philter-lite" version = "0.4.0" description = "Open-source PHI-filtering software. A fork of philter-ucsf." readme = "README.md" -authors = ["Beau Norgeot ", "Tim Orme "] +authors = [ + "Beau Norgeot ", + "Tim Orme ", +] license = "BSD-3-Clause" -classifiers=[ +classifiers = [ "Programming Language :: Python", "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.8", "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", @@ -17,19 +19,28 @@ classifiers=[ ] [tool.poetry.dependencies] -python = "^3.8" +python = "^3.9" chardet = "^5.2.0" -nltk = "^3.5" +nltk = "^3.8.1" xmltodict = "^0.13.0" toml = "^0.10.0" [tool.poetry.dev-dependencies] -pre-commit = "^3.3.3" -pytest = "^7.4.0" +pre-commit = "^3.7.0" +pytest = "^8.1.1" [tool.poetry.scripts] philter_lite = 'philter_lite.main:main' [build-system] -requires = ["poetry_core>=1.6.0"] +requires = ["poetry_core>=1.8.1"] build-backend = "poetry.core.masonry.api" + + +[tool.mypy] +check_untyped_defs = true +no_implicit_optional = true + +[[tool.mypy.overrides]] +module = ["nltk", "nltk.*"] +ignore_missing_imports = true diff --git a/tox.ini b/tox.ini index b275f24..1bbd585 100644 --- a/tox.ini +++ b/tox.ini @@ -1,5 +1,5 @@ [tox] -envlist = typing,lint,py38,py39,py310,py311 +envlist = typing,lint,py39,py310,py311 isolated_build = True [testenv]