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Add new plotting feature for median normalization scale factors #15

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stufield opened this issue Oct 10, 2023 · 2 comments
Open

Add new plotting feature for median normalization scale factors #15

stufield opened this issue Oct 10, 2023 · 2 comments
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@stufield
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Feature

Users would likely benefit from a simple plotting routine to plot normalization scale factors (by group).
To identify potential bias in the sample groups that might skew analyses.

R code

This would involve porting over some functionality from SomaLogic's internal code base, SomaNormalization.

plotMedNorm()
@amanda-hi
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amanda-hi commented Oct 13, 2023

This should be added (internally) to SomaPlot as well. When this happens, we'll need to add a lifecycle deprecation message in SomaNormalization to indicate that the function is moving to SomaPlot. In the meantime, it'll be re-exported in SomaNormalization.

Other to-do: this could be done with the ROC-plotting functions in SomaClassify as well. See #14 and #13

@stufield
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Do we need to add to SomaPlot (internal) as well? Or would the re-export from SomaNormalization be sufficient?

@stufield stufield added feature New feature or request and removed enhancement labels Feb 14, 2024
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