Main tool: QUAST
Code repository: https://github.com/ablab/quast
Additional tools:
- minimap2 2.28-r1209
Basic information on how to use this tool:
- executable: quast.py
- help: --help
- version: --version
- description: Genome assembly evaluation tool
Additional information:
This image provides minimal requirements of QUAST. Some of the functions may not work. Please use staphb/quast:5.3.0 for the full functionality of the program.
Full documentation: https://quast.sourceforge.net/docs/manual.html
# basic statistics without reference
quast.py contigs.fasta
# genome evaluation with reference
quast.py contigs.fasta -r reference.fasta.gz
# metagenomic assemblies
metaquast.py contigs_1 contigs_2 ... -r reference_1,reference_2,reference_3,...