diff --git a/CHANGELOG.md b/CHANGELOG.md
index bab0003e..7426bfa4 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 <!-- towncrier release notes start -->
 
+## [0.46.0](https://github.com/Substra/substrafl/releases/tag/0.46.0) - 2024-06-03
+
+
+### Changed
+
+- Add `apt update` to docker user images to limit vulnerabilities. ([#213](https://github.com/Substra/substrafl/pull/213))
+
+
 ## [0.45.0](https://github.com/Substra/substrafl/releases/tag/0.45.0) - 2024-03-27
 
 
diff --git a/changes/213.changed b/changes/213.changed
deleted file mode 100644
index ef6ff17f..00000000
--- a/changes/213.changed
+++ /dev/null
@@ -1 +0,0 @@
-Add `apt update` to docker user images to limit vulnerabilities.
diff --git a/pyproject.toml b/pyproject.toml
index b4de737c..45552d53 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -21,8 +21,8 @@ readme = "README.md"
 dependencies = [
     "numpy>=1.24",
     "cloudpickle>=1.6.0",
-    "substra~=0.52.0",
-    "substratools~=0.21.3",
+    "substra~=0.53.0",
+    "substratools~=0.21.4",
     "pydantic>=2.3.0,<3.0",
     "pip>=21.2",
     "tqdm",
diff --git a/substrafl/__version__.py b/substrafl/__version__.py
index 4d8afa5b..6f709872 100644
--- a/substrafl/__version__.py
+++ b/substrafl/__version__.py
@@ -1 +1 @@
-__version__ = "0.45.0"
+__version__ = "0.46.0"