cluster.json

{
        "__default__" :
        {
                "time" : "2-12:00:00",
                "cpus": 1,
                "memory": "15G",
                "jobname": "{rule}.{wildcards}",
                "partition": "hbfraser,hns,owners",
                "torque_queue": "batch"
        },
        "get_sra":
        {
                "time": "18:00:00"
        },
        "call_variants":{
                "cpus": 4,
                "time": "6:00:00"

        },
        "bcf_call_variants":{
                "cpus": 4,
                "time": "6:00:00"

        },
        "dedup" :
        {
                "time": "12:00:00",
                "memory": "32G"
        },
        "map_gdna":
        {
                "time": "1-00:00:00",
                "cpus": 50,
                "memory": "15G"

        },
        "star_wasp" :
        {
                "time" : "08:00:00",
                "cpus": 10,
                "memory": "30G"
        },
        "star_nowasp" :
        {
                "time" : "08:00:00",
                "cpus": 10,
                "memory": "30G"
        },
        "star_map" :
        {
                "time" : "01:00:00",
                "cpus": 4,
                "memory": "30G"
        },
        "score_snps":
        {
            "cpus": 4,
            "memory": "30G"
        },
        "fisher_pvalues":
        {
            "cpus": 4

        },
        "unmapped_reads_kmers":{
            "cpus": 10
        },
        "mapped_reads_kmers":{
            "cpus": 10
        },
        "blast_contamination":
        {
            "cpus": 20,
            "time": "4:00:00"
        }
}