From 0c74b2e048c1456c564e84587c88597a62e010cc Mon Sep 17 00:00:00 2001 From: Daniel Danis Date: Mon, 6 May 2024 09:48:19 -0400 Subject: [PATCH 1/3] Next development iteration `2.0.3-SNAPSHOT`. --- docs/conf.py | 2 +- lirical-background/pom.xml | 2 +- lirical-cli/pom.xml | 2 +- .../src/main/java/org/monarchinitiative/lirical/cli/Main.java | 2 +- lirical-configuration/pom.xml | 2 +- lirical-core/pom.xml | 2 +- lirical-exomiser-db-adapter/pom.xml | 2 +- lirical-io/pom.xml | 2 +- pom.xml | 2 +- 9 files changed, 9 insertions(+), 9 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 0918d2ace..6543d687b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -56,7 +56,7 @@ # The short X.Y version. version = u'2.0' # The full version, including alpha/beta/rc tags. -release = u'2.0.2' +release = u'2.0.3-SNAPSHOT' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/lirical-background/pom.xml b/lirical-background/pom.xml index 1c0dac5d9..90258026c 100644 --- a/lirical-background/pom.xml +++ b/lirical-background/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/lirical-cli/pom.xml b/lirical-cli/pom.xml index 1e85f5511..47bc422ef 100644 --- a/lirical-cli/pom.xml +++ b/lirical-cli/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/lirical-cli/src/main/java/org/monarchinitiative/lirical/cli/Main.java b/lirical-cli/src/main/java/org/monarchinitiative/lirical/cli/Main.java index 71cb3a643..886e2c5ff 100644 --- a/lirical-cli/src/main/java/org/monarchinitiative/lirical/cli/Main.java +++ b/lirical-cli/src/main/java/org/monarchinitiative/lirical/cli/Main.java @@ -16,7 +16,7 @@ footer = Main.FOOTER) public class Main implements Callable { - public static final String VERSION = "lirical v2.0.2"; + public static final String VERSION = "lirical v2.0.3-SNAPSHOT"; public static final int WIDTH = 120; public static final String FOOTER = "\nSee the full documentation at https://thejacksonlaboratory.github.io/LIRICAL/stable"; diff --git a/lirical-configuration/pom.xml b/lirical-configuration/pom.xml index 315dd39d6..df2bfad6d 100644 --- a/lirical-configuration/pom.xml +++ b/lirical-configuration/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/lirical-core/pom.xml b/lirical-core/pom.xml index 97fc5d9f4..6120c8b06 100644 --- a/lirical-core/pom.xml +++ b/lirical-core/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/lirical-exomiser-db-adapter/pom.xml b/lirical-exomiser-db-adapter/pom.xml index b44a3e9ed..59029b16d 100644 --- a/lirical-exomiser-db-adapter/pom.xml +++ b/lirical-exomiser-db-adapter/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/lirical-io/pom.xml b/lirical-io/pom.xml index d143f83b0..46db08827 100644 --- a/lirical-io/pom.xml +++ b/lirical-io/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.2 + 2.0.3-SNAPSHOT 4.0.0 diff --git a/pom.xml b/pom.xml index aad495b25..2dd86b042 100644 --- a/pom.xml +++ b/pom.xml @@ -6,7 +6,7 @@ org.monarchinitiative.lirical LIRICAL pom - 2.0.2 + 2.0.3-SNAPSHOT lirical-core lirical-io From 0525e96054654618748876ffc84deac278e81052 Mon Sep 17 00:00:00 2001 From: Daniel Danis Date: Mon, 27 Jan 2025 12:21:15 +0100 Subject: [PATCH 2/3] Use `biodownload<=1.1.1,<2.0.0`. --- pom.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pom.xml b/pom.xml index 2dd86b042..ebade2b4c 100644 --- a/pom.xml +++ b/pom.xml @@ -147,7 +147,7 @@ org.monarchinitiative.biodownload biodownload - 1.1.0 + [1.1.1,2.0.0) commons-io From 56839780c50272a575701255990d9e865ef5cb2b Mon Sep 17 00:00:00 2001 From: Daniel Danis Date: Mon, 27 Jan 2025 12:29:01 +0100 Subject: [PATCH 3/3] Make release `2.0.3`. --- docs/conf.py | 2 +- lirical-background/pom.xml | 2 +- lirical-cli/pom.xml | 2 +- lirical-configuration/pom.xml | 2 +- lirical-core/pom.xml | 2 +- lirical-exomiser-db-adapter/pom.xml | 2 +- lirical-io/pom.xml | 2 +- pom.xml | 2 +- 8 files changed, 8 insertions(+), 8 deletions(-) diff --git a/docs/conf.py b/docs/conf.py index 6543d687b..c2974769b 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -56,7 +56,7 @@ # The short X.Y version. version = u'2.0' # The full version, including alpha/beta/rc tags. -release = u'2.0.3-SNAPSHOT' +release = u'2.0.3' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/lirical-background/pom.xml b/lirical-background/pom.xml index 90258026c..9d6156fca 100644 --- a/lirical-background/pom.xml +++ b/lirical-background/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/lirical-cli/pom.xml b/lirical-cli/pom.xml index 47bc422ef..9b904f3e1 100644 --- a/lirical-cli/pom.xml +++ b/lirical-cli/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/lirical-configuration/pom.xml b/lirical-configuration/pom.xml index df2bfad6d..b7d7a6e24 100644 --- a/lirical-configuration/pom.xml +++ b/lirical-configuration/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/lirical-core/pom.xml b/lirical-core/pom.xml index 6120c8b06..18e5c310f 100644 --- a/lirical-core/pom.xml +++ b/lirical-core/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/lirical-exomiser-db-adapter/pom.xml b/lirical-exomiser-db-adapter/pom.xml index 59029b16d..1c88e363b 100644 --- a/lirical-exomiser-db-adapter/pom.xml +++ b/lirical-exomiser-db-adapter/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/lirical-io/pom.xml b/lirical-io/pom.xml index 46db08827..18792aec7 100644 --- a/lirical-io/pom.xml +++ b/lirical-io/pom.xml @@ -5,7 +5,7 @@ LIRICAL org.monarchinitiative.lirical - 2.0.3-SNAPSHOT + 2.0.3 4.0.0 diff --git a/pom.xml b/pom.xml index ebade2b4c..fd3ee36cc 100644 --- a/pom.xml +++ b/pom.xml @@ -6,7 +6,7 @@ org.monarchinitiative.lirical LIRICAL pom - 2.0.3-SNAPSHOT + 2.0.3 lirical-core lirical-io