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I found the POS and END in vcf file are not same as it reported in xls files.
e.g. in VCF
CHROM POS END SVLEN SVTYPE
chr1 10933 181382 170450 DEL
in DEL.xls
SVStart SVEnd Refstart1 Refend1 Refstart2 Refend2
14974 180994 10465 14973 180995 185494
Which output file I should use if I need the SV position information?
SVs with SVTYPE as BND have ISVTYPE as INVB or TTLC.
I'm wondering the difference between those two? Can I see INVB as intra-chromosomal translocation and TTLC as inter-chromosomal translocation?
Thank you!
The text was updated successfully, but these errors were encountered:
I have two questions about the output files:
I found the POS and END in vcf file are not same as it reported in xls files.
e.g. in VCF
CHROM POS END SVLEN SVTYPE
chr1 10933 181382 170450 DEL
in DEL.xls
SVStart SVEnd Refstart1 Refend1 Refstart2 Refend2
14974 180994 10465 14973 180995 185494
Which output file I should use if I need the SV position information?
SVs with SVTYPE as BND have ISVTYPE as INVB or TTLC.
I'm wondering the difference between those two? Can I see INVB as intra-chromosomal translocation and TTLC as inter-chromosomal translocation?
Thank you!
The text was updated successfully, but these errors were encountered: