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environment.yaml
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environment.yaml
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name: scc
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- bcftools=1.6=1
- htslib=1.7=0
- igv=2.4.9=0
- pysam=0.14.0=py36_htslib1.7_1
- samtools=1.7=1
- asn1crypto=0.22.0=py36_0
- backports=1.0=py36_1
- backports.functools_lru_cache=1.5=py36_0
- blas=1.1=openblas
- bleach=2.0.0=py_1
- bokeh=0.12.13=py36_0
- bzip2=1.0.6=1
- ca-certificates=2018.1.18=0
- cairo=1.14.10=0
- certifi=2018.1.18=py36_0
- cffi=1.11.2=py36_0
- chardet=3.0.4=py36_0
- click=6.7=py_1
- cmocean=1.1=py_0
- colorama=0.3.9=py36_0
- cryptography=2.1.4=py36_0
- curl=7.55.1=0
- cycler=0.10.0=py36_0
- cython=0.27.3=py36_0
- dask-core=0.17.0=py_0
- dbus=1.10.22=0
- decorator=4.1.2=py36_0
- entrypoints=0.2.3=py36_1
- expat=2.2.5=0
- fastcache=1.0.2=py36_0
- fftw=3.3.7=0
- flask=0.12.2=py36_0
- fontconfig=2.12.6=0
- freetype=2.8.1=0
- gettext=0.19.8.1=0
- glib=2.55.0=0
- gmp=6.1.2=0
- gmpy2=2.0.8=py36_1
- graphite2=1.3.10=0
- gsl=2.2.1=blas_openblas_4
- gst-plugins-base=1.8.0=0
- gstreamer=1.8.0=1
- h5py=2.7.1=py36_2
- harfbuzz=1.7.1=0
- hdf5=1.10.1=1
- html5lib=1.0.1=py_0
- icu=58.2=0
- idna=2.6=py36_1
- imageio=2.2.0=py36_0
- ipykernel=4.8.1=py36_0
- ipython=6.2.1=py36_1
- ipython_genutils=0.2.0=py36_0
- ipywidgets=7.1.1=py36_0
- itsdangerous=0.24=py_2
- jedi=0.11.1=py36_0
- jinja2=2.10=py36_0
- jpeg=9b=2
- jsonschema=2.6.0=py36_1
- jupyter=1.0.0=py36_0
- jupyter_client=5.2.2=py36_0
- jupyter_console=5.2.0=py36_0
- jupyter_core=4.4.0=py_0
- krb5=1.14.2=0
- libffi=3.2.1=3
- libiconv=1.15=0
- libpng=1.6.34=0
- libsodium=1.0.15=1
- libssh2=1.8.0=2
- libtiff=4.0.9=0
- libxcb=1.12=1
- libxml2=2.9.7=0
- llvmlite=0.21.0=py36_0
- lzo=2.10=0
- markupsafe=1.0=py36_0
- matplotlib=2.1.2=py36_0
- mistune=0.8.3=py_0
- mpc=1.0.3=4
- mpfr=3.1.5=0
- mpmath=1.0.0=py_0
- nb_conda_kernels=2.1.0=py36_0
- nbconvert=5.3.1=py_1
- nbformat=4.4.0=py36_0
- ncurses=5.9=10
- networkx=2.1=py36_0
- nose=1.3.7=py36_2
- notebook=5.4.0=py36_0
- numexpr=2.6.4=py36_1
- numpy=1.14.2=py36_blas_openblas_200
- olefile=0.45.1=py36_0
- openblas=0.2.20=7
- openssl=1.0.2n=0
- pandas=0.22.0=py36_0
- pandoc=2.1.1=0
- pandocfilters=1.4.1=py36_0
- pango=1.40.14=0
- parso=0.1.1=py_0
- patsy=0.5.0=py36_0
- pcre=8.39=0
- pep8=1.7.1=py_0
- pexpect=4.4.0=py36_0
- pickleshare=0.7.4=py36_0
- pillow=5.0.0=py36_0
- pip=9.0.1=py36_1
- pixman=0.34.0=1
- plotly=2.2.3=py36_0
- prompt_toolkit=1.0.15=py36_0
- ptyprocess=0.5.2=py36_0
- pycparser=2.18=py36_0
- pygments=2.2.0=py36_0
- pymc=2.3.7=py36_0
- pyopenssl=17.4.0=py36_0
- pyparsing=2.2.0=py36_0
- pyqt=5.6.0=py36_4
- pysocks=1.6.8=py36_1
- pytables=3.4.2=py36_7
- python=3.6.4=0
- python-dateutil=2.6.1=py36_0
- pytz=2018.3=py_0
- pywavelets=0.5.2=py36_1
- pyyaml=3.12=py36_1
- pyzmq=17.0.0=py36_3
- qt=5.6.2=7
- qtconsole=4.3.1=py36_0
- r-base=3.4.1=3
- readline=7.0=0
- requests=2.18.4=py36_1
- rpy2=2.8.5=py36r3.4.1_0
- scikit-image=0.13.1=py36_0
- scikit-learn=0.19.1=py36_blas_openblas_201
- scipy=1.0.1=py36_blas_openblas_200
- seaborn=0.8.1=py36_0
- send2trash=1.4.2=py_0
- setuptools=38.5.1=py36_0
- simplegeneric=0.8.1=py36_0
- singledispatch=3.4.0.3=py36_0
- sip=4.18=py36_1
- six=1.11.0=py36_1
- sqlite=3.20.1=2
- statsmodels=0.8.0=py36_0
- sympy=1.1.1=py36_0
- terminado=0.8.1=py36_0
- testpath=0.3.1=py36_0
- tk=8.6.7=0
- toolz=0.8.2=py_2
- tornado=4.5.3=py36_0
- traitlets=4.3.2=py36_0
- urllib3=1.22=py36_0
- wcwidth=0.1.7=py36_0
- webencodings=0.5=py36_0
- werkzeug=0.14.1=py_0
- wheel=0.30.0=py36_2
- widgetsnbextension=3.1.3=py36_0
- xorg-libxau=1.0.8=3
- xorg-libxdmcp=1.1.2=3
- xz=5.2.3=0
- yaml=0.1.6=0
- zeromq=4.2.3=2
- zlib=1.2.11=0
- intel-openmp=2019.0=118
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran=3.0.0=1
- libstdcxx-ng=7.2.0=h7a57d05_2
- markdown=2.6.9=py36_0
- mkl=2019.0=118
- mkl-service=1.1.2=py36h651fb7a_4
- numba=0.36.2=np114py36hc6662d5_0
- openjdk=8.0.121=1
prefix: /projects/flynnb/software/anaconda/envs/scc