issue with matio

[sandeepangara]

Hello @TheLegendAli,

While building caffe in DeepLab I am facing the following issue

ubuntu@ip-172-31-21-77:~/workspace/DeepLab-Context2/build$ cmake ..
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- system
-- thread
-- filesystem
-- Found gflags (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libgflags.so)
-- Found glog (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libglog.so)
-- Found PROTOBUF Compiler: /usr/bin/protoc
-- Found lmdb (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/liblmdb.so)
-- Found LevelDB (include: /usr/include, library: /usr/lib/x86_64-linux-gnu/libleveldb.so)
-- Found Snappy (include: /usr/include, library: /usr/lib/libsnappy.so)
-- CUDA detected: 7.0
-- Found cuDNN: ver. 4.0.7 found (include: /usr/local/cuda-7.0/include, library: /usr/local/cuda-7.0/lib64/libcudnn.so)
-- Added CUDA NVCC flags for: sm_30
-- OpenCV found (/usr/local/share/OpenCV)
-- Found Atlas (include: /usr/include, library: /usr/lib/libatlas.so)
-- NumPy ver. 1.8.2 found (include: /usr/lib/python2.7/dist-packages/numpy/core/include)
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- python

-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)

-- ******************* Caffe Configuration Summary *******************
-- General:
-- Version : 1.0.0-rc3
-- Git : 6abd64d-dirty
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- Release CXX flags : -O3 -DNDEBUG -fPIC -Wall -Wno-sign-compare -Wno-uninitialized
-- Debug CXX flags : -g -fPIC -Wall -Wno-sign-compare -Wno-uninitialized

-- Build type : Release

-- BUILD_SHARED_LIBS : ON
-- BUILD_python : ON
-- BUILD_matlab : OFF
-- BUILD_docs : ON
-- CPU_ONLY : OFF
-- USE_OPENCV : ON
-- USE_LEVELDB : ON
-- USE_LMDB : ON

-- ALLOW_LMDB_NOLOCK : OFF

-- Dependencies:
-- BLAS : Yes (Atlas)
-- Boost : Yes (ver. 1.54)
-- glog : Yes
-- gflags : Yes
-- protobuf : Yes (ver. 2.5.0)
-- lmdb : Yes (ver. 0.9.10)
-- LevelDB : Yes (ver. 1.15)
-- Snappy : Yes (ver. 1.1.0)
-- OpenCV : Yes (ver. 3.1.0)

-- CUDA : Yes (ver. 7.0)

-- NVIDIA CUDA:
-- Target GPU(s) : Auto
-- GPU arch(s) : sm_30

-- cuDNN : Yes (ver. 4.0.7)

-- Python:
-- Interpreter : /usr/bin/python2.7 (ver. 2.7.6)
-- Libraries : /usr/lib/x86_64-linux-gnu/libpython2.7.so (ver 2.7.6)

-- NumPy : /usr/lib/python2.7/dist-packages/numpy/core/include (ver 1.8.2)

-- Documentaion:
-- Doxygen : No

-- config_file :

-- Install:

-- Install path : /home/ubuntu/workspace/DeepLab-Context2/build/install

-- Configuring done
-- Generating done
-- Build files have been written to: /home/ubuntu/workspace/DeepLab-Context2/build
ubuntu@ip-172-31-21-77:/workspace/DeepLab-Context2/build$ make -j32 all
[ 1%] Running C++/Python protocol buffer compiler on /home/ubuntu/workspace/DeepLab-Context2/src/caffe/proto/caffe.proto
Scanning dependencies of target proto
[ 1%] Building CXX object src/caffe/CMakeFiles/proto.dir///include/caffe/proto/caffe.pb.cc.o
Linking CXX static library ../../lib/libproto.a
[ 1%] Built target proto
[ 2%] [ 2%] [ 4%] [ 4%] [ 4%] [ 5%] [ 6%] [ 8%] [ 8%] [ 8%] [ 8%] [ 9%] [ 9%] [ 9%] [ 9%] [ 11%] [ 13%] [ 13%] [ 13%] [ 15%] [ 15%] [ 16%] [ 16%] [ 16%] [ 18%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] [ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_sgd_solver.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_silence_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_embed_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_batch_reindex_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_softmax_loss_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_log_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_threshold_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_spatial_product_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_sigmoid_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_bnll_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_sigmoid_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_inner_product_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_domain_transform_forward_only_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_absval_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_dropout_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_mvn_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_tanh_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_pooling_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_domain_transform_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_lcn_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_pooling_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_lrn_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_eltwise_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_tile_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_filter_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_deconv_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_power_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_reduction_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_concat_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_im2col_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_hdf5_output_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_relu_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_hdf5_data_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_euclidean_loss_layer.cu.o
[ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_tanh_layer.cu.o
[ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_sigmoid_cross_entropy_loss_layer.cu.o
[ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_bias_layer.cu.o
[ 22%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_scale_layer.cu.o
[ 22%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_base_data_layer.cu.o
[ 23%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_contrastive_loss_layer.cu.o
[ 23%] [ 23%] [ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_exp_layer.cu.o
[ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_lrn_layer.cu.o
[ 25%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_conv_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_elu_layer.cu.o
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[ 27%] [ 29%] [ 29%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_split_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_prelu_layer.cu.o
[ 30%] [ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_relu_layer.cu.o
[ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_softmax_layer.cu.o
[ 31%] [ 31%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_batch_norm_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/layers/./cuda_compile_generated_cudnn_softmax_layer.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_math_functions.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_im2col.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/util/./cuda_compile_generated_interp.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adadelta_solver.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adagrad_solver.cu.o
[ 31%] [ 33%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_rmsprop_solver.cu.o
[ 33%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_nesterov_solver.cu.o
Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile.dir/solvers/./cuda_compile_generated_adam_solver.cu.o
Scanning dependencies of target caffe
[ 33%] [ 33%] [ 34%] [ 34%] [ 34%] [ 36%] [ 37%] [ 37%] [ 37%] [ 38%] [ 38%] [ 38%] [ 40%] [ 40%] [ 40%] [ 43%] [ 43%] [ 43%] [ 44%] [ 45%] [ 47%] [ 47%] [ 47%] [ 47%] [ 48%] [ 50%] [ 50%] [ 50%] [ 50%] [ 50%] [ 50%] Building CXX object src/caffe/CMakeFiles/caffe.dir/common.cpp.o
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Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/bnll_layer.cpp.o
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Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/cudnn_conv_layer.cpp.o
Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/base_conv_layer.cpp.o
Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/contrastive_loss_layer.cpp.o
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../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [examples/mnist/convert_mnist_data] Error 1
make[1]: *** [examples/CMakeFiles/convert_mnist_data.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
Linking CXX executable siamese/convert_mnist_siamese_data
Linking CXX executable cifar10/convert_cifar_data
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
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../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [examples/cifar10/convert_cifar_data] Error 1
make[1]: *** [examples/CMakeFiles/convert_cifar_data.dir/all] Error 2
Linking CXX executable compute_image_mean
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/compute_image_mean] Error 1
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Linking CXX executable convert_imageset
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
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Linking CXX executable test_net
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[100%] Built target net_speed_benchmark
Linking CXX executable upgrade_net_proto_binary
[100%] Built target finetune_net
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/upgrade_net_proto_text] Error 1
make[1]: *** [tools/CMakeFiles/upgrade_net_proto_text.dir/all] Error 2
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/upgrade_solver_proto_text] Error 1
make[1]: *** [tools/CMakeFiles/upgrade_solver_proto_text.dir/all] Error 2
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
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Linking CXX executable extract_features
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/extract_features] Error 1
make[1]: *** [tools/CMakeFiles/extract_features.dir/all] Error 2
Linking CXX executable cpp_classification/classification
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [examples/cpp_classification/classification] Error 1
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Linking CXX executable caffe
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarCreate' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_CreateVer'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarWrite' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_VarFree'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadInfo' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Close'
../lib/libcaffe.so.1.0.0-rc3: undefined reference to Mat_VarReadDataLinear' ../lib/libcaffe.so.1.0.0-rc3: undefined reference toMat_Open'
collect2: error: ld returned 1 exit status
make[2]: *** [tools/caffe] Error 1
make[1]: *** [tools/CMakeFiles/caffe.bin.dir/all] Error 2
Linking CXX shared library ../lib/_caffe.so
Creating symlink /home/ubuntu/workspace/DeepLab-Context2/python/caffe/_caffe.so -> /home/ubuntu/workspace/DeepLab-Context2/build/lib/_caffe.so
[100%] Built target pycaffe
make: *** [all] Error 2
ubuntu@ip-172-31-21-77:/workspace/DeepLab-Context2/build$

I have installed matio, Could you please help me.

[TheLegendAli]

Not sure what the problem is. Did you trying compiling using regular 'make all' command?

[abidrahmank]

Hello @TheLegendAli , I am also facing the same issue. Can you please tell me which version of matio you used?

[sandeepangara]

Hello @abidrahmank ,

I am able to build after making the following changes

1. Include the following dependencies in CMakeLists.txt

find_package(MATIO REQUIRED)
include_directories(${MATIO_INCLUDE_DIR})

2. Include "${MATIO_LIBRARIES}" target_link_libraries in src/caffe/CMakeLists.txt

3. unzip and include the attached file in CMakeScripts directory
   FindMATIO.cmake.zip

Then build caffe.

[abidrahmank]

Thanks @anssandeep . I didn't get the second point. I am not much familiar with cmake. Can you make it a little more clear?

[sandeepangara]

Hello @abidrahmank,

Include ${MATIO_LIBRARIES} in target_link_libraries as follows

target_link_libraries(caffe proto
${BLAS_LIBRARIES}
${Boost_LIBRARIES}
${GFLAGS_LIBRARIES}
${GLOG_LIBRARIES}
${HDF5_LIBRARIES}
${LEVELDB_LIBS}
${LMDB_LIBRARIES}
${OpenCV_LIBS}
${CMAKE_THREAD_LIBS_INIT}
${MATIO_LIBRARIES}
)

[ksnzh]

@anssandeep I had the same problem. Thanks to your help. It works.

[makaspacex]

@anssandeep I had the same problem and it works now. Thanks for your help.

[Benedetta89]

I did what you say and I got this error:

CMake Error at CMakeLists.txt:28 (find_package):
By not providing "FindMATIO.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "MATIO", but
CMake did not find one.

Could not find a package configuration file provided by "MATIO" with any of
the following names:

MATIOConfig.cmake
matio-config.cmake

Add the installation prefix of "MATIO" to CMAKE_PREFIX_PATH or set
"MATIO_DIR" to a directory containing one of the above files. If "MATIO"
provides a separate development package or SDK, be sure it has been
installed.

-- Configuring incomplete, errors occurred!
See also "/home/benedetta/Scrivania/caffe/build/CMakeFiles/CMakeOutput.log".
See also "/home/benedetta/Scrivania/caffe/build/CMakeFiles/CMakeError.log".
Makefile:544: set di istruzioni per l'obiettivo "cmake_check_build_system" non riuscito
make: *** [cmake_check_build_system] Errore 1

Where Did I go wrong?

[askerlee]

A more elegant (but equivalent) way to @anssandeep 's method:
Append the following to cmake/Dependencies.cmake:

find_package(MATIO REQUIRED)
include_directories(${MATIO_INCLUDE_DIR})
list(APPEND Caffe_LINKER_LIBS ${MATIO_LIBRARIES})

Then put @anssandeep 's FindMATIO.cmake into cmake/Modules/
Done.

[yc67]

Hi, after adding in the above lines "find_package..." and "include_directories...", I'm getting the following error:

I tried to directly paste the lines into my Makefile.config.example, and I tried to type them up, but they all generate the same error. Could you please give me some suggestion? Thanks!!

[askerlee]

hi @yc67 , were you building with cmake?
In my environment, Makefile.config is never generated or used.

[yc67]

Thank you! I was changing the wrong file. Now I've added "find_package..." and "include_dir..." and "list..." to cmake/dependencies.cmake, and I added the findmatio.cmake file to cmake/Modules/, but I'm still getting the following error:

Should I specify a path to MATIO somewhere? Thanks!

[askerlee]

@yc67 have you installed libmatio-dev?

[yc67]

Thank you! Problem solved.

[alimurreza]

@anssandeep thanks. your solution works for the installation.
@Benedetta89 Just follow what @anssandeep said. There is a subtle thing you might have missed. You have do the the changes in 2 different CMakeLists.txt

change 1:

Open the CMakeLists.txt in the directory where you have the Makefile.config and add these two lines
find_package(MATIO REQUIRED)
include_directories(${MATIO_INCLUDE_DIR})

change 2:

Open the CMakeLists.txt inside the src/caffe directory (This is a different one)
now at the end of the target_link_libraries() add the ${MATIO_LIBRARIES} as follows:

target_link_libraries(caffe proto
${BLAS_LIBRARIES}
...
${CMAKE_THREAD_LIBS_INIT}
${MATIO_LIBRARIES})

now do the build procedure using
cmake ..
make all

It should work.

[feipanir]

Same problem while building with cmake, thanks very much!

[ygjwd12345]

@alimurreza I use cmake to make deeplabv2 ,but I can't find caffe.bin. Can you tell how to find it?