swap beta models to make 3 compartment the main diameter model

Tinggong · Jul 9, 2024 · 73999d2 · 73999d2
1 parent 64a2619
commit 73999d2
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/src/models_smt.jl b/src/models_smt.jl
@@ -116,15 +116,15 @@ The fraction vector represents fractions of the axon, CSF and dot with the fract
 # Reference
 Gong, T., Maffei, C., Dann, E., Lee, H.-H., Lee Hansol, Huang, S., Suzanne, H., Yendiki, A., 2024. Imaging the relationship of axon diameter and myelination in macaque and human brain, in: ISMRM.
 """
-Base.@kwdef mutable struct ExCaliber <: BiophysicalModel
+Base.@kwdef mutable struct ExCaliber_beta <: BiophysicalModel
     axon::Cylinder = Cylinder()
     extra::Zeppelin = Zeppelin()
     csf::Iso = Iso(; diff=2.0e-9)
     dot::Iso = Iso(; diff=0.0)
     fracs::Vector{Float64} = [0.7, 0.1, 0.1]
 end
 
-Base.@kwdef mutable struct ExCaliber_beta <: BiophysicalModel
+Base.@kwdef mutable struct ExCaliber <: BiophysicalModel
     axon::Cylinder = Cylinder()
     extra::Zeppelin = Zeppelin()
     dot::Iso = Iso(; diff=0.0)
@@ -161,15 +161,15 @@ end
 Reture predicted model signals from BiophysicalModel `model` and imaging protocol 'prot'.
     `links` is a optional argument that specify parameter links in the model.
 """
-function model_signals(excaliber::ExCaliber_beta, prot::Protocol)
+function model_signals(excaliber::ExCaliber, prot::Protocol)
     fextra = 1 - sum(excaliber.fracs)
     signals =
         excaliber.fracs[1] .* compartment_signals(excaliber.axon, prot) .+
         fextra .* compartment_signals(excaliber.extra, prot) .+ excaliber.fracs[2]
     return signals
 end
 
-function model_signals(excaliber::ExCaliber, prot::Protocol)
+function model_signals(excaliber::ExCaliber_beta, prot::Protocol)
     fextra = 1 - sum(excaliber.fracs)
     signals =
         excaliber.fracs[1] .* compartment_signals(excaliber.axon, prot) .+