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Generate Benchmark for rare disease treatments #6

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cbizon opened this issue Sep 2, 2022 · 2 comments
Open

Generate Benchmark for rare disease treatments #6

cbizon opened this issue Sep 2, 2022 · 2 comments

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@cbizon
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cbizon commented Sep 2, 2022

https://ojrd.biomedcentral.com/articles/10.1186/s13023-021-01923-0/tables/1

Make a data.tsv based on Table 1 in this paper, which collects treatments for rare diseases
@cbizon
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cbizon commented Sep 2, 2022

  1. Parse the table
  2. script calling name resolver with the disease and drug names to get identifiers (https://name-resolution-sri.renci.org/docs)
  3. Format into tsv
  4. QC

@andrewsu
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addressed in #10

@andrewsu andrewsu mentioned this issue Jun 29, 2023
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@andrewsu @cbizon