buster-9.4.0.def

Bootstrap: docker
From: debian:buster

%help
USAGE: salome [-h]

NOTES:
1) This image is read-only!

EXAMPLES:
List availailable apps
    $ singularity apps <image-name>

Run salome in TUI mode:
    $ singularity run   <image-name> -t scrypt.py args:....

Run salome in GUI mode:
    $ singularity run --nv --app salome  <image-name>

# Run salome in GUI mode on NoVNC/Virtual :
#     $ singularity run --nv --app vgl_salome  <image-name> ...

Run salome in TUI mode for Hifimagnet :
    $ singularity run --app hifimagnet-tui  <image-name> ...

Run salome in GUI mode for Hifimagnet :
    $ singularity run --nv --app hifimagnet_gui  <image-name> ...

To add support for MeshGems:
    $ singularity run --nv -B ${MESHGEMS_LICDIR}:/opt/DISTENE/DLim  [--app <app>] <image-app>
where MESHGEMS_LICDIR points to the directory holding a valid MeshGems license

%runscript
exec salome "$@"

%setup
    echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh"
    if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then
        echo "Hrmm, this container does not have /bin/sh installed..."
        exit 1
    fi
    # prepare for MeshGems
    mkdir -p $SINGULARITY_ROOTFS/opt/DISTENE/DLim
    mkdir -p $SINGULARITY_ROOTFS/tmp    
    cp /home/LNCMI-G/trophime/Salome_Packages/SALOME-9.4.0-DB10.tgz $SINGULARITY_ROOTFS/tmp/
    cp /home/LNCMI-G/trophime/Salome_Packages/install-SALOME-9.4.0-DB10.sh $SINGULARITY_ROOTFS/tmp/
    # cp /home/LNCMI-G/trophime/Salome_Packages/SALOME-9.4.0-DBtesting-SRC.tgz $SINGULARITY_ROOTFS/tmp/SALOME-9.4.0-MPI-DBtesting.tgz
    # cp /home/LNCMI-G/trophime/Salome_Packages/install-SALOME-9.4.0-MPI-DBtesting.sh $SINGULARITY_ROOTFS/tmp/
    mkdir -p $SINGULARITY_ROOTFS/usr/local/share/salome/test
    for script in $(ls /home/LNCMI-G/trophime/Salome_Tests/scripts/*py); do
       cp $script  $SINGULARITY_ROOTFS/usr/local/share/salome/test
    done
    mkdir -p $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    for cfg in $(ls /home/LNCMI-G/trophime/Salome_Tests/H1H4/*yaml); do
       cp $cfg  $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    done
    for dat in $(ls /home/LNCMI-G/trophime/Salome_Tests/H1H4/*dat); do
       cp $dat  $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    done
exit 0


%environment
export PATH=/opt/SALOME-9.4.0-DB10:$PATH

export DISTENE_LICENSE_FILE=/opt/DISTENE/DLim/dlim8.key

export FEELPP_REPOSITORY=/feel
export HIFIMAGNET=/opt/SALOME-9.4.0-DB10/BINARIES-DB10/HIFIMAGNET/bin/salome/

# Defining alias for security
alias ls='ls --color=auto'
alias ll='ls -ls'
alias cp='cp -i'
alias mv='mv -i'
alias rm='rm -i'
alias grep='grep --color'

# # Add support for openmp
# export OMP_NUM_THREADS=1
# export OPENBLAS_NUM_THREADS=1

export LANG=C

%labels
AUTHOR christophe.trophime@lncmi.cnrs.fr
Maintainer: Christophe Trophime
Maintainer_email: christophe.trophime@lncmi.cnrs.fr
Version 1.0

%post

mkdir -p /feel
mkdir -p /scratch /tmp

# Installing Salome
cd /tmp && sh ./install-SALOME-9.4.0-DB10.sh
rm /tmp/install-SALOME-9.4.0-DB10.sh
rm /tmp/SALOME-9.4.0-DB10.tgz
find /opt/SALOME-9.4.0-DB10 -name \*.py[co] | xargs -r rm

# Patch installation
find /opt/SALOME-9.4.0-DB10 -name \*.cmake | xargs perl -pi -e "s|/home/feelpp/salome/|/opt/SALOME-9.4.0-DB10/|g"
find /opt/SALOME-9.4.0-DB10 -name \*.cmake | xargs perl -pi -e "s|/INSTALL/|/BINARIES-DB10/|g"
find /opt/SALOME-9.4.0-DB10 -name \*.py | xargs perl -pi -e "s|/home/feelpp/salome/SALOME-9.4.0-DB10/SOURCES|/opt/SALOME-9.4.0-DB10/SOURCES|g"

perl -pi -e "s|\[ParaView\]|\[ParaView\]\\n    context.addToLdLibraryPath(r\"/usr/lib/paraview\")|" /opt/SALOME-9.4.0-DB10/salome
perl -pi -e "s|\[qt\]|\[qt\]\\n    context.setVariable(r\"QT5_ROOT_DIR\", r\"/usr/lib/x86_64-linux-gnu/qt5\", overwrite=True)|" /opt/SALOME-9.4.0-DB10/salome

# To get HifiMagnet Salome plugin working
apt -y install net-tools
apt -y install python3-pint python3-freesteam python3-yaml yamllint
apt -y install libpastix-dev
apt -y install libann0 libmetis5
apt -y install libcgns-dev

# to get salome test working
apt-get -y install cmake

# ## Installing VirtualGl for noVNC
# wget https://sourceforge.net/projects/virtualgl/files/2.6.3/virtualgl_2.6.3_amd64.deb/download -O /tmp/virtualgl_2.6.3_amd64.deb
# apt -y install mesa-utils mesa-utils-extra x11-apps libxv1
# dpkg -i /tmp/virtualgl_2.6.3_amd64.deb
# rm -f /tmp/virtualgl_2.6.3_amd64.deb


# To use on Cluster with InfinyBand and Slurm
apt -y install dapl2-utils \
                   libdapl2 \
                   libibverbs1 \
                   librdmacm1 \
                   libcxgb3-1 \
                   libipathverbs1 \
                   libmlx4-1 \
                   libmlx5-1 \
                   libmthca1 \
                   libnes1 \
                   libpmi0 \
                   libslurm33

# Cleanup
apt -y clean
apt -y autoclean

# # Try to cleanup more
# for package in $(dpkg -l | egrep ".*\-dev\b" | awk '{print $2}'); do \
#      echo "Remove $package"; \
#      apt -y remove $package; \
# done

# create custom motd
# Install figlet!
apt -y install figlet

cat > /.singularity.d/env/99-motd.sh <<EOF   
case \$0 in
    /.singularity.d/actions/shell)
        figlet Salome 9.4.0
        echo
        echo "Hello \$USER from shell" ;;
    /.singularity.d/actions/exec)
        echo "Hello \$USER from exec" ;;
    /.singularity.d/actions/run)
        echo "Hello \$USER from run" ;;
    /.singularity.d/actions/test)
        echo "Hello \$USER from test" ;;
esac
EOF

%test
for script in $(ls /usr/local/share/salome/test/*py); do
  echo -n "Running $script"
  export LD_LIBRARY_PATH=/usr/lib/paraview:$LD_LIBRARY_PATH
  export PATH=/opt/SALOME-9.4.0-DB10:$PATH
  salome -t $script > /dev/null 2>&1
  status=$?
  if [ "x$status" = "0" ]; then
     echo -en "[\033[32m  OK  \033[39m]"
  else
     echo -en "[\033[32m  OK  \033[39m]"
  fi   
  echo
done

%apprun salome
echo "Need to pass --nv options to singularity"
salome "$@"

# %apprun vgl_salome
# vglrun salome "$@"