official-xenial-cea.def

Bootstrap: docker
From: ubuntu:xenial

%runscript
exec echo "The runscript is the containers default runtime command!"

%setup
    echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh"
    if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then
        echo "Hrmm, this container does not have /bin/sh installed..."
        exit 1
    fi
    echo "Temporary hack for virtualgl"
    mkdir -p $SINGULARITY_ROOTFS/tmp
    cp /home/LNCMI-G/trophime/Downloads/virtualgl_2.5.2_amd64.deb $SINGULARITY_ROOTFS/tmp
    echo "Temporary hack for Salome"
    cp /home/LNCMI-G/trophime/Downloads/SALOME-9.3.0-UB16.04-SRC.tgz $SINGULARITY_ROOTFS/tmp
exit 0


%environment
export PATH=/opt/salome/:$PATH
export FEELPP_REPOSITORY=/feel
export DISTENE_LICENSE_FILE=/opt/DISTENE/DLim/dlim8.key

%labels
AUTHOR christophe.trophime@lncmi.cnrs.fr

%post

# create repositories
mkdir -p /scratch /tmp /home /mnt
mkdir -p /opt/DISTENE/DLim
mkdir -p /feel

# # To add Debian/Ubuntu Lncmi repository
# apt-get update && apt-get -y install gnupg2
# gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv 535D3508
# gpg --export --armor 535D3508 | apt-key add -
# echo "deb http://euler/~trophime/debian/ xenial main" >  /etc/apt/sources.list.d/lncmi.list

# firefox-esr on Debian 
apt-get update
apt-get -y upgrade
apt-get -y install lsb-release \
           firefox \
           iputils-ping net-tools \
         python-simplejson jsonlint \
         python-yaml yamllint \
         wget curl

# Install Vglrun ( getting deb from sourceforge is broken... )

apt-get -y install libglu1-mesa mesa-utils mesa-utils-extra x11-apps libxv1
apt-get -y install libxcb-keysyms1

if [ ! /tmp/virtualgl_2.5.2_amd64.deb  ]; then
   wget https://sourceforge.net/projects/virtualgl/files/2.5.2/virtualgl_2.5.2_amd64.deb/download  -O /tmp/virtualgl_2.5.2_amd64.deb
fi
dpkg -i /tmp/virtualgl_2.5.2_amd64.deb

# # Work around "ERROR: ld.so: object 'libvglfaker.so' from LD_PRELOAD cannot be preloaded: ignored."
# chmod u+s /usr/lib/libvglfaker.so
# chmod u+s /usr/lib/libdlfaker.so

# apt-get install nvidia-driver nvidia-smi

# Install Salome

# Needed for Cea version
apt -y install libgfortran3

# # Needed for universal bin
# apt-get -y install libxss1 libgomp1 libquadmath0
# # add libOPENTURNS.so
# PLATFORM=$(lsb_release -cs)
# curl http://debian.openturns.org/openturns.org-repo.key | apt-key add -
# echo deb http://ubuntu.openturns.org $PLATFORM main | tee /etc/apt/sources.list.d/openturns.list
# apt-get update
# apt-cache search openturns
# apt-get -y install python-openturns
# # ot plugins:
# #  otfftw otlhs otlm otmixmod otmorris otrobopt otsvm

# to get some performance metrices for Salome
apt-get -y install python-memory-profiler

if [ ! -f /tmp/SALOME-9.3.0-UB16.04-SRC.tgz ]; then
 wget --http-user barbu --http-password 171167 \
       -O /tmp/SALOME-9.3.0-UB16.04-SRC.tgz \
       "http://www.salome-platform.org/downloads/current-version/DownloadDistr?platform=OS1.UB16.04&version=9.3.0"
fi
mkdir -p /opt/
cd /opt
tar zxf /tmp/SALOME-9.3.0-UB16.04-SRC.tgz
mv SALOME-9.3.0-UB16.04-SRC salome
rm /tmp/SALOME-9.3.0-UB16.04-SRC.tgz

# # To use on Cluster with InfinyBand and Slurm
# # !!! Watch out depends on Release !!!
# apt-get -y install dapl2-utils \
#                    libdapl2 \
#                    libibverbs1 \
#                    librdmacm1 \
#                    libcxgb3-1 \
#                    libipathverbs1 \
#                    libmlx4-1 \
#                    libmlx5-1 \
#                    libmthca1 \
#                    libnes1 \
#                    libpmi0
                   
# clean up
apt-get -y autoclean