salome-docker.def

Bootstrap: docker
From: feelpp/salome:8.3.0-nvidia

%runscript
exec echo "The runscript is the containers default runtime command!"

%setup
    echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh"
    if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then
        echo "Hrmm, this container does not have /bin/sh installed..."
        exit 1
    fi
    # place to perform checks on docker images
    # mkdir -p $SINGULARITY_ROOTFS/opt/DISTENE/DLim
    # mkdir -p $SINGULARITY_ROOTFS/opt/DISTENE/Tools/bin
    # cp /opt/DISTENE/Tools/bin/dlim8.var.sh                               $SINGULARITY_ROOTFS/opt/DISTENE/Tools/bin/
    # cp /opt/DISTENE/Tools/bin/dlim8.var.csh                              $SINGULARITY_ROOTFS/opt/DISTENE/Tools/bin/
    # cp /opt/DISTENE/DLim/dlim8.key                                       $SINGULARITY_ROOTFS/opt/DISTENE/DLim/
    # cp /home/LNCMI-G/trophime/Salome_Packages/SALOME-8.3.0-MPI-UB16.10.tgz $SINGULARITY_ROOTFS/opt/

exit 0


%environment

export FEELPP_REPOSITORY=/feel
export DISTENE_LICENSE_FILE=/opt/DISTENE/DLim/dlim8.key 
export LD_LIBRARY_PATH=/usr/lib/paraview/:$LD_LIBRARY_PATH
export PATH=/opt/SALOME-8.3.0-MPI-DB9.3/:$PATH

%labels
AUTHOR christophe.trophime@lncmi.cnrs.fr

%post

# create repositories
mkdir -p /scratch /tmp /home /mnt
mkdir -p /opt/DISTENE/DLim
mkdir -p /feel

export LANG=C

# # To add Debian/Ubuntu Lncmi repository
# apt-get update && apt-get -y install gnupg2
# gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv 535D3508
# gpg --export --armor 535D3508 | apt-key add -
# echo "deb http://euler/~trophime/debian/ xenial main" >  /etc/apt/sources.list.d/lncmi.list

# firefox-esr on Debian 
apt-get update
apt-get -y install lsb-release \
           iceweasel \
           iputils-ping net-tools \
         python-simplejson jsonlint \
         python-yaml yamllint

# To use on Cluster with InfinyBand and Slurm
# !!! Watch out depends on Release !!!
apt-get -y install dapl2-utils \
                   libdapl2 \
                   libibverbs1 \
                   librdmacm1 \
                   libcxgb3-1 \
                   libipathverbs1 \
                   libmlx4-1 \
                   libmlx5-1 \
                   libmthca1 \
                   libnes1 \
                   libpmi0

# Install Vglrun
wget https://sourceforge.net/projects/virtualgl/files/2.5.2/virtualgl_2.5.2_amd64.deb/download -O /tmp/virtualgl_2.5.2_amd64.deb
apt-get -y install mesa-utils mesa-utils-extra x11-apps libxv1
dpkg -i /tmp/virtualgl_2.5.2_amd64.deb

# Work around "ERROR: ld.so: object 'libvglfaker.so' from LD_PRELOAD cannot be preloaded: ignored."
chmod u+s /usr/lib/libvglfaker.so
chmod u+s /usr/lib/libdlfaker.so