stretch-8.4.0.def

Bootstrap: docker
From: debian:stretch

%help
USAGE: salome [-h]

NOTES:
1) This image is read-only!

EXAMPLES:
List availailable apps
    $ singularity apps <image-name>

Run salome in TUI mode:
    $ singularity run   <image-name> salome -t scrypt.py args:....

Run salome in GUI mode:
    $ singularity run --nv --app salome  <image-name>

Run salome in GUI mode on NoVNC/Virtual :
    $ singularity run --nv --app vgl_salome  <image-name> ...

Run salome in TUI mode for Hifimagnet :
    $ singularity run --app hifimagnet-tui  <image-name> ...

Run salome in GUI mode for Hifimagnet :
    $ singularity run --nv --app hifimagnet_gui  <image-name> ...

To add support for MeshGems:
    $ singularity run --nv -B ${MESHGEMS_LICDIR}:/opt/DISTENE/DLim  [--app <app>] <image-app>
where MESHGEMS_LICDIR points to the directory holding a valid MeshGems license

%runscript
exec salome "$@"

%setup
    echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh"
    if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then
        echo "Hrmm, this container does not have /bin/sh installed..."
        exit 1
    fi
    # prepare for MeshGems
    mkdir -p $SINGULARITY_ROOTFS/opt/DISTENE/DLim
    mkdir -p $SINGULARITY_ROOTFS/tmp    
    cp /home/LNCMI-G/trophime/Salome_Packages/SALOME-8.4.0-MPI-DB9.5.tgz $SINGULARITY_ROOTFS/tmp/
    cp /home/LNCMI-G/trophime/Salome_Packages/install-SALOME-8.4.0-MPI-DB9.5.sh $SINGULARITY_ROOTFS/tmp/
    mkdir -p $SINGULARITY_ROOTFS/usr/local/share/salome/test
    for script in $(ls /home/LNCMI-G/trophime/Salome_Tests/scripts/*py); do
       cp $script  $SINGULARITY_ROOTFS/usr/local/share/salome/test
    done
    mkdir -p $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    for cfg in $(ls /home/LNCMI-G/trophime/Salome_Tests/H1H4/*yaml); do
       cp $cfg  $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    done
    for dat in $(ls /home/LNCMI-G/trophime/Salome_Tests/H1H4/*dat); do
       cp $dat  $SINGULARITY_ROOTFS/usr/local/share/salome/H1H4
    done
exit 0


%environment
export PATH=/opt/SALOME-8.4.0-MPI-DB9.5:$PATH

export DISTENE_LICENSE_FILE=/opt/DISTENE/DLim/dlim8.key

export FEELPP_REPOSITORY=/feel
export HIFIMAGNET=/opt/SALOME-8.4.0-MPI-DB9.5/BINARIES-DB9.5/HIFIMAGNET/bin/salome/

# Defining alias for security
alias ls='ls --color=auto'
alias ll='ls -ls'
alias cp='cp -i'
alias mv='mv -i'
alias rm='rm -i'
alias grep='grep --color'

# Add support for openmp
export OMP_NUM_THREADS=1
export OPENBLAS_NUM_THREADS=1

export LANG=C

%labels
AUTHOR christophe.trophime@lncmi.cnrs.fr
Maintainer: Christophe Trophime
Maintainer_email: christophe.trophime@lncmi.cnrs.fr
Version 1.0

%post

mkdir -p /feel
mkdir -p /scratch /tmp

# Installing Salome
cd /tmp && sh ./install-SALOME-8.4.0-MPI-DB9.5.sh
rm /tmp/install-SALOME-8.4.0-MPI-DB9.5.sh
find /opt/SALOME-8.4.0-MPI-DB9.5 -name \*.py[co] | xargs -r rm

## Installing VirtualGl for noVNC
wget https://sourceforge.net/projects/virtualgl/files/2.5.2/virtualgl_2.5.2_amd64.deb/download -O /tmp/virtualgl_2.5.2_amd64.deb
apt-get -y install mesa-utils mesa-utils-extra x11-apps libxv1
dpkg -i /tmp/virtualgl_2.5.2_amd64.deb
rm -f /tmp/virtualgl_2.5.2_amd64.deb


# To use on Cluster with InfinyBand and Slurm
apt-get -y install dapl2-utils \
                   libdapl2 \
                   libibverbs1 \
                   librdmacm1 \
                   libcxgb3-1 \
                   libipathverbs1 \
                   libmlx4-1 \
                   libmlx5-1 \
                   libmthca1 \
                   libnes1 \
                   libpmi0 \
                   libslurm30

# Cleanup
apt -y clean
apt -y autoclean

%test
for script in $(ls /usr/local/share/salome/test/*py); do
  echo -n "Running $script"
  export LD_LIBRARY_PATH=/usr/lib/paraview:$LD_LIBRARY_PATH
  export PATH=/opt/SALOME-8.4.0-MPI-DB9.5:$PATH
  salome -t $script > /dev/null 2>&1
  status=$?
  if [ "x$status" = "0" ]; then
     echo -en "[\033[32m  OK  \033[39m]"
  else
     echo -en "[\033[32m  OK  \033[39m]"
  fi   
  echo
done

%apprun salome
echo "Need to pass --nv options to singularity"
salome "$@"

%apprun vgl_salome
vglrun salome "$@"

%apprun hifimagnet_tui
salome -t -m GEOM,SMESH,HIFIMAGNET $HIFIMAGNET//HIFIMAGNET_Cmd.py args:"$@"

%apprun hifimagnet_gui
echo "Need to pass --nv options to singularity"
salome -m GEOM,SMESH,HIFIMAGNET $HIFIMAGNET//HIFIMAGNET_Cmd.py args:"$@"