From 668e4fa1ce4d91c62706600966f156b34b905d4b Mon Sep 17 00:00:00 2001 From: Quarto GHA Workflow Runner Date: Wed, 29 May 2024 20:14:38 +0000 Subject: [PATCH] Built site for gh-pages --- .nojekyll | 2 +- about.html | 2 +- index.html | 2 +- installing-duckdb.html | 2 +- modules/hw_bonus.html | 2 +- modules/week01/hw-01-1.html | 2 +- modules/week01/hw-01-2.html | 2 +- modules/week01/index-01.html | 2 +- modules/week02/hw-02.html | 2 +- modules/week02/index-02.html | 2 +- modules/week03/hw-03-1.html | 2 +- modules/week03/hw-03-2.html | 2 +- modules/week03/hw-03-3.html | 2 +- modules/week03/index-03.html | 2 +- modules/week04/hw-04-1.html | 2 +- modules/week04/hw-04-2.html | 2 +- modules/week04/hw-04-3.html | 2 +- modules/week04/index-04.html | 2 +- modules/week05/bash-essentials.html | 2 +- modules/week05/hw-05-1.html | 2 +- modules/week05/hw-05-2.html | 2 +- modules/week05/hw-05-3.html | 2 +- modules/week05/hw-05-4.html | 2 +- modules/week05/index-05.html | 2 +- modules/week06/hw-06-1.html | 2 +- modules/week06/hw-06-2.html | 2 +- modules/week06/hw-06-3.html | 2 +- modules/week06/index-06.html | 2 +- modules/week06/python-programming-cont.html | 2 +- modules/week06/python-programming.html | 2 +- modules/week07/hw-07-1.html | 2 +- modules/week07/hw-07-2.html | 2 +- modules/week07/index-07.html | 2 +- .../week07/virtual-environments-notes.html | 2 +- modules/week08/case-a.html | 2 +- modules/week08/case-b.html | 2 +- modules/week08/case-c.html | 2 +- modules/week08/case-d.html | 2 +- modules/week08/index-08.html | 2 +- modules/week09/FAIR_assessment_tool.html | 865 +++++++++++++++++ modules/week09/hw-09.html | 24 +- modules/week09/index-09.html | 2 +- modules/week10/index-10.html | 2 +- resources.html | 2 +- search.json | 884 +++++++++--------- sitemap.xml | 150 +-- syllabus.html | 2 +- 47 files changed, 1452 insertions(+), 557 deletions(-) create mode 100644 modules/week09/FAIR_assessment_tool.html diff --git a/.nojekyll b/.nojekyll index 84d0266..873d833 100644 --- a/.nojekyll +++ b/.nojekyll @@ -1 +1 @@ -c42578a2 \ No newline at end of file +8d6be088 \ No newline at end of file diff --git a/about.html b/about.html index a078ed8..c854f6f 100644 --- a/about.html +++ b/about.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/index.html b/index.html index 1f865db..5060e85 100644 --- a/index.html +++ b/index.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/installing-duckdb.html b/installing-duckdb.html index 127b814..9227b34 100644 --- a/installing-duckdb.html +++ b/installing-duckdb.html @@ -248,7 +248,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/hw_bonus.html b/modules/hw_bonus.html index 188f591..d31039b 100644 --- a/modules/hw_bonus.html +++ b/modules/hw_bonus.html @@ -243,7 +243,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week01/hw-01-1.html b/modules/week01/hw-01-1.html index 76893d2..46f4b78 100644 --- a/modules/week01/hw-01-1.html +++ b/modules/week01/hw-01-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week01/hw-01-2.html b/modules/week01/hw-01-2.html index 1270fdf..ced7318 100644 --- a/modules/week01/hw-01-2.html +++ b/modules/week01/hw-01-2.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week01/index-01.html b/modules/week01/index-01.html index 36d8de2..28a410a 100644 --- a/modules/week01/index-01.html +++ b/modules/week01/index-01.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week02/hw-02.html b/modules/week02/hw-02.html index b9ed611..a2fc608 100644 --- a/modules/week02/hw-02.html +++ b/modules/week02/hw-02.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week02/index-02.html b/modules/week02/index-02.html index b59f4cb..636e60c 100644 --- a/modules/week02/index-02.html +++ b/modules/week02/index-02.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week03/hw-03-1.html b/modules/week03/hw-03-1.html index 7933ce7..dbf2822 100644 --- a/modules/week03/hw-03-1.html +++ b/modules/week03/hw-03-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week03/hw-03-2.html b/modules/week03/hw-03-2.html index 47946b9..097d84e 100644 --- a/modules/week03/hw-03-2.html +++ b/modules/week03/hw-03-2.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week03/hw-03-3.html b/modules/week03/hw-03-3.html index e473e9d..409b7d6 100644 --- a/modules/week03/hw-03-3.html +++ b/modules/week03/hw-03-3.html @@ -243,7 +243,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week03/index-03.html b/modules/week03/index-03.html index 441f26b..602b6d2 100644 --- a/modules/week03/index-03.html +++ b/modules/week03/index-03.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week04/hw-04-1.html b/modules/week04/hw-04-1.html index 3806cb7..6c8b36b 100644 --- a/modules/week04/hw-04-1.html +++ b/modules/week04/hw-04-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week04/hw-04-2.html b/modules/week04/hw-04-2.html index 8c0e450..74d152a 100644 --- a/modules/week04/hw-04-2.html +++ b/modules/week04/hw-04-2.html @@ -243,7 +243,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week04/hw-04-3.html b/modules/week04/hw-04-3.html index 3d3679e..964d4fe 100644 --- a/modules/week04/hw-04-3.html +++ b/modules/week04/hw-04-3.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week04/index-04.html b/modules/week04/index-04.html index 72aa514..d95b4dc 100644 --- a/modules/week04/index-04.html +++ b/modules/week04/index-04.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/bash-essentials.html b/modules/week05/bash-essentials.html index 8b6aa97..906b68b 100644 --- a/modules/week05/bash-essentials.html +++ b/modules/week05/bash-essentials.html @@ -215,7 +215,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/hw-05-1.html b/modules/week05/hw-05-1.html index 5430a89..e6a99d1 100644 --- a/modules/week05/hw-05-1.html +++ b/modules/week05/hw-05-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/hw-05-2.html b/modules/week05/hw-05-2.html index f0d975c..6120d45 100644 --- a/modules/week05/hw-05-2.html +++ b/modules/week05/hw-05-2.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/hw-05-3.html b/modules/week05/hw-05-3.html index ba18cca..19c246f 100644 --- a/modules/week05/hw-05-3.html +++ b/modules/week05/hw-05-3.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/hw-05-4.html b/modules/week05/hw-05-4.html index d866c9e..bc0e56c 100644 --- a/modules/week05/hw-05-4.html +++ b/modules/week05/hw-05-4.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week05/index-05.html b/modules/week05/index-05.html index 78ad4b9..1e2466b 100644 --- a/modules/week05/index-05.html +++ b/modules/week05/index-05.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/hw-06-1.html b/modules/week06/hw-06-1.html index 26ea91a..042be0d 100644 --- a/modules/week06/hw-06-1.html +++ b/modules/week06/hw-06-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/hw-06-2.html b/modules/week06/hw-06-2.html index e1446c3..da3e8da 100644 --- a/modules/week06/hw-06-2.html +++ b/modules/week06/hw-06-2.html @@ -243,7 +243,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/hw-06-3.html b/modules/week06/hw-06-3.html index c94f5c6..504cf15 100644 --- a/modules/week06/hw-06-3.html +++ b/modules/week06/hw-06-3.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/index-06.html b/modules/week06/index-06.html index b861997..cfbae1b 100644 --- a/modules/week06/index-06.html +++ b/modules/week06/index-06.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/python-programming-cont.html b/modules/week06/python-programming-cont.html index e97f042..92bf917 100644 --- a/modules/week06/python-programming-cont.html +++ b/modules/week06/python-programming-cont.html @@ -251,7 +251,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week06/python-programming.html b/modules/week06/python-programming.html index abbaef5..c64984a 100644 --- a/modules/week06/python-programming.html +++ b/modules/week06/python-programming.html @@ -248,7 +248,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week07/hw-07-1.html b/modules/week07/hw-07-1.html index 9fe6a08..0f17b9a 100644 --- a/modules/week07/hw-07-1.html +++ b/modules/week07/hw-07-1.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week07/hw-07-2.html b/modules/week07/hw-07-2.html index fa4946c..b9edacc 100644 --- a/modules/week07/hw-07-2.html +++ b/modules/week07/hw-07-2.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week07/index-07.html b/modules/week07/index-07.html index d4f6024..e9a7f7d 100644 --- a/modules/week07/index-07.html +++ b/modules/week07/index-07.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week07/virtual-environments-notes.html b/modules/week07/virtual-environments-notes.html index f5527a0..da7b2d9 100644 --- a/modules/week07/virtual-environments-notes.html +++ b/modules/week07/virtual-environments-notes.html @@ -248,7 +248,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week08/case-a.html b/modules/week08/case-a.html index f2ee5f8..2ad598a 100644 --- a/modules/week08/case-a.html +++ b/modules/week08/case-a.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week08/case-b.html b/modules/week08/case-b.html index 70b122d..0005ce7 100644 --- a/modules/week08/case-b.html +++ b/modules/week08/case-b.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week08/case-c.html b/modules/week08/case-c.html index 3d58dc9..42ede31 100644 --- a/modules/week08/case-c.html +++ b/modules/week08/case-c.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week08/case-d.html b/modules/week08/case-d.html index 5d552de..ddd6c38 100644 --- a/modules/week08/case-d.html +++ b/modules/week08/case-d.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week08/index-08.html b/modules/week08/index-08.html index 6a8fbe8..f325d0a 100644 --- a/modules/week08/index-08.html +++ b/modules/week08/index-08.html @@ -214,7 +214,7 @@
  • - Week 9 - Whale entanglement sdcMicro exercise + Week 9 - How FAIR is your data set?
  • diff --git a/modules/week09/FAIR_assessment_tool.html b/modules/week09/FAIR_assessment_tool.html new file mode 100644 index 0000000..1d94f0c --- /dev/null +++ b/modules/week09/FAIR_assessment_tool.html @@ -0,0 +1,865 @@ + + + + + + + + + +eds213 - FAIR assessment tool + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +
    + +
    + +
    + + + + +
    + +
    +
    +

    FAIR assessment tool

    +
    + + + +
    + + + + +
    + + + +
    + + +
    +

    Findable

    +
    +

    1. Does the dataset have any identifiers assigned?

    +
      +
    1. No identifier

    2. +
    3. Local identifier

    4. +
    5. Web address (URL)

    6. +
    7. Globally unique identifier, citable and persistent (e.g. DOI, PURL, ARK or Handle)

    8. +
    +
    +
    +

    2. Is the dataset identifier included in all metadata records/files describing the data?

    +
      +
    1. No

    2. +
    3. Yes

    4. +
    +
    +
    +

    3. How is the data described with metadata?

    +
      +
    1. The data are not described

    2. +
    3. Brief title and description

    4. +
    5. Comprehensive, but in a text-based, non-standard format

    6. +
    7. Comprehensively using a recognized formal machine-readable metadata schema

    8. +
    +
    +
    +

    4. What type of repository or registry is the metadata record in?

    +
      +
    1. The data are not described in any repository

    2. +
    3. Local institutional repository

    4. +
    5. Domain-specific repository

    6. +
    7. Generalist public repository

    8. +
    9. Data are in one place but discoverable through several registries

    10. +
    +
    +
    +
    +

    Accessible

    +
    +

    5. How accessible is the data

    +
      +
    1. No access to data or metadata

    2. +
    3. Access to metadata only

    4. +
    5. Unspecified conditional access, e.g. contact the data custodian

    6. +
    7. Embargoed access after a specified date

    8. +
    9. A de-identified / modified subset of the data is publicly accessible

    10. +
    11. Fully accessible to persons who meet explicitly stated conditions, e.g. ethics approval for

    12. +
    +

    sensitive data

    +
      +
    1. Publicly accessible
    2. +
    +
    +
    +

    6. Is the data available online without requiring specialized protocols or tools once access has been approved?

    +
      +
    1. No access to data

    2. +
    3. By individual arrangement

    4. +
    5. File download from online location

    6. +
    7. Non-standard web service (e.g. OpenAPI, Swagger, Informal API)

    8. +
    9. Standard web service API (e.g. OGC)

    10. +
    +
    +
    +

    7. Will the metadata record be available even if the data are no longer available?

    +
      +
    1. Unsure

    2. +
    3. No

    4. +
    5. Yes

    6. +
    +
    +
    +
    +

    Interoperable

    +
    +

    8. What (file) formats is the data available in?

    +
      +
    1. Mostly in a proprietary format

    2. +
    3. In a structured, open standard, non-machine-readable format

    4. +
    5. In a structured, open standard, machine-readable format

    6. +
    +
    +
    +

    9. What best describes the types of vocabularies/ontologies/tagging schemas used to define the data elements?

    +
      +
    1. Data elements not described

    2. +
    3. No standards have been applied in the description of data elements

    4. +
    5. Standardised vocabularies/ontologies/schemas without global identifiers

    6. +
    7. Standardised, open and universal, using resolvable global identifiers linking to explanations

    8. +
    +
    +
    +

    10. How is the metadata linked to other data and metadata (to enhance context and clearly indicate relationships)?

    +
      +
    1. There are no links to other metadata

    2. +
    3. The metadata record includes URI links to related metadata, data and definitions

    4. +
    5. Metadata is represented in machine-readable format, e.g. in a linked format such as

    6. +
    +

    Resource Description Framework (RDF)

    +
    +
    +
    +

    Reusable

    +
    +

    11. Which of the following best describes the licence/usage rights attached to the data?

    +
      +
    1. No licence

    2. +
    3. Non-standard text-based licence

    4. +
    5. Non-standard machine-readable licence (clearly indicating under what conditions the data

    6. +
    +

    may be reused)

    +
      +
    1. Standard text-based licence

    2. +
    3. Standard machine-readable licence (e.g. Creative Commons)

    4. +
    +
    +
    +

    12. How much provenance information has been captured to facilitate data reuse?

    +
      +
    1. No provenance information is recorded

    2. +
    3. Partially recorded

    4. +
    5. Fully recorded in a text format

    6. +
    7. Fully recorded in a machine-readable format

    8. +
    +
    +
    +
    +

    Acknowledgements

    +

    This exercise has been adapted from the UK Data Service https://ukdataservice.ac.uk/app/uploads/exercise_fairdata.pdf and is licensed under a Creative Commons Attribution CC-BY 4.0 International License.

    + + +
    + +
    +
    +


    +

    Creative Commons License
    This work is licensed under a Creative Commons Attribution 4.0 International License

    +

    UCSB logo

    +
    + +
    + + + + + \ No newline at end of file diff --git a/modules/week09/hw-09.html b/modules/week09/hw-09.html index 621c71f..7154a59 100644 --- a/modules/week09/hw-09.html +++ b/modules/week09/hw-09.html @@ -7,7 +7,7 @@ -eds213 - Week 9 - Whale entanglement sdcMicro exercise +eds213 - Week 9 - How FAIR is your data set?