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2.2 Compile SV Impacts (as needed) #12

2.2 Compile SV Impacts (as needed)

2.2 Compile SV Impacts (as needed) #12

### Overwrite FrEDI data with past data
name: Compile SV Impacts
on:
workflow_dispatch:
inputs:
svSectors:
type: choice
description: Which SV impact sectors to update
options:
- Air Quality - Childhood Asthma
- Air Quality - Premature Mortality
- Labor
- Extreme Temperature
- Roads
- Transportation Impacts from High Tide Flooding
- Coastal Properties
branch_name:
type: string
description: Which FrEDI Package branch do you want to use?
jobs:
compile_data:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
name: Process Data
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Send sector selection
run: |
echo "${{ github.event.inputs.svSectors }}"
- name: Setup R
uses: r-lib/actions/setup-r@v2
- name: Setup R package dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
cache: true
cache-version: 1
packages: |
any::tidyverse
any::ggpubr
any::openxlsx
any::devtools
- name: Install FrEDI
run: |
Rscript -e 'devtools::install_github(
repo = "https://github.com/USEPA/FrEDI",
ref = "${{ github.event.inputs.branch_name }}",
subdir = "FrEDI",
dependencies = FALSE,
upgrade = "never",
force = TRUE,
type = "source"
)'
- name: Configure SV data
run: |
Rscript -e '
source("./scripts/update_svImpactLists.R")
fpath1 <- "."
fpath1 |> print()
sectors1 <- c("${{ github.event.inputs.svSectors }}")
list1 <- update_svImpactLists(
fpath0 = fpath1,
sectors = sectors1,
save = T,
return = F
)
'
- name: Commit results
run: |
git config --local core.autocrlf false
git config --local user.email "${{ github.actor }}@users.noreply.github.com"
git config --local user.name "${{ github.actor }}"
git add data/sv/impactsLists/**.rds
git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
git commit -a -m "Updated SV FrEDI impact lists for ${{ github.event.inputs.svSectors }}"
git push