2.2 Compile SV Impacts (as needed) #12
Workflow file for this run
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### Overwrite FrEDI data with past data | |
name: Compile SV Impacts | |
on: | |
workflow_dispatch: | |
inputs: | |
svSectors: | |
type: choice | |
description: Which SV impact sectors to update | |
options: | |
- Air Quality - Childhood Asthma | |
- Air Quality - Premature Mortality | |
- Labor | |
- Extreme Temperature | |
- Roads | |
- Transportation Impacts from High Tide Flooding | |
- Coastal Properties | |
branch_name: | |
type: string | |
description: Which FrEDI Package branch do you want to use? | |
jobs: | |
compile_data: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
name: Process Data | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Send sector selection | |
run: | | |
echo "${{ github.event.inputs.svSectors }}" | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
- name: Setup R package dependencies | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
cache: true | |
cache-version: 1 | |
packages: | | |
any::tidyverse | |
any::ggpubr | |
any::openxlsx | |
any::devtools | |
- name: Install FrEDI | |
run: | | |
Rscript -e 'devtools::install_github( | |
repo = "https://github.com/USEPA/FrEDI", | |
ref = "${{ github.event.inputs.branch_name }}", | |
subdir = "FrEDI", | |
dependencies = FALSE, | |
upgrade = "never", | |
force = TRUE, | |
type = "source" | |
)' | |
- name: Configure SV data | |
run: | | |
Rscript -e ' | |
source("./scripts/update_svImpactLists.R") | |
fpath1 <- "." | |
fpath1 |> print() | |
sectors1 <- c("${{ github.event.inputs.svSectors }}") | |
list1 <- update_svImpactLists( | |
fpath0 = fpath1, | |
sectors = sectors1, | |
save = T, | |
return = F | |
) | |
' | |
- name: Commit results | |
run: | | |
git config --local core.autocrlf false | |
git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
git config --local user.name "${{ github.actor }}" | |
git add data/sv/impactsLists/**.rds | |
git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
git commit -a -m "Updated SV FrEDI impact lists for ${{ github.event.inputs.svSectors }}" | |
git push |