update_fredi_data.yml

### Overwrite FrEDI data with past data
# on:
#   workflow_run:
#     workflows: ["Compile FrEDI Data"]
name: 3. Update FrEDI Data (if tests passed)

on:
  workflow_dispatch:
    inputs:
      passed_tests:
        type: choice
        description: Did data pass tests?
        required: true
        options: 
        - no
        - yes
    

jobs:
  # This workflow contains a single job called "build"
  update_data:
    runs-on: ubuntu-latest
    name: Update Data
    steps:
      - name: Checkout
        uses: actions/checkout@v3
        
      - name: Setup R
        uses: r-lib/actions/setup-r@v2
      
      - name: Setup R package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          cache: true
          cache-version: 1
          packages: |
            any::tidyverse
            any::ggpubr
            any::openxlsx
            any::devtools
            any::admisc
      
      - name: Send test status
        run: echo "${{ github.event.inputs.passed_tests }}"
        
      - name: Update Data
        if: |
          github.event.inputs.passed_tests == 'true'
        run:  |
          git rm data/sysdata.rda
          cp data/tmp_sysdata.rda data/sysdata.rda

      - name: Add SV Data to sysdata
        if: |
          github.event.inputs.passed_tests == 'true'
        run:  |
          Rscript -e '
            pPath0 <- "."
            sPath0 <- "./scripts/add_svData_to_sysdata.R"
            sPath0 |> source()
            add_svData_to_sysdata(projectDir = pPath0, save = T)
            '
      - name: Commit results
        if: |
          github.event.inputs.passed_tests == 'true'
        run: |
          git config --local core.autocrlf false
          git config --local user.email "${{ github.actor }}@users.noreply.github.com"
          git config --local user.name  "${{ github.actor }}"
          git rm data/tmp_sysdata.rda
          git add data/*.rda
          git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
          git commit -a -m "Updated sysdata and added SV data to sysdata"
          git push