update_svImpacts.yml

### Overwrite FrEDI data with past data
name: Compile SV Impacts

on: 
  workflow_dispatch:
    inputs:
      svSectors:
        type: choice
        description: Which SV impact sectors to update
        options:
          - Air Quality - Childhood Asthma
          - Air Quality - Premature Mortality
          - Labor
          - Extreme Temperature
          - Roads
          - Transportation Impacts from High Tide Flooding
          - Coastal Properties
      branch_name:
        type: string
        description: Which FrEDI Package branch do you want to use?
jobs:
  compile_data:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    
    name: Process Data
    steps:
      - name: Checkout
        uses: actions/checkout@v3
      
      - name: Send sector selection
        run: |
          echo "${{ github.event.inputs.svSectors }}"
        
      - name: Setup R
        uses: r-lib/actions/setup-r@v2
      
      - name: Setup R package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          cache: true
          cache-version: 1
          packages: |
            any::tidyverse
            any::ggpubr
            any::openxlsx
            any::devtools
      
      - name: Install FrEDI
        run: |
          Rscript -e 'devtools::install_github(
              repo         = "https://github.com/USEPA/FrEDI",
              ref          = "${{ github.event.inputs.branch_name }}",
              subdir       = "FrEDI",
              dependencies = FALSE,
              upgrade      = "never",
              force        = TRUE,
              type         = "source"
            )'
#           
#       - name: Configure SV data
#         run: |
#           Rscript -e '
#             source("./scripts/update_svImpactLists.R")
#             fpath1      <- "."
#             fpath1 |> print()
#             sectors1    <- c("${{ github.event.inputs.svSectors }}")
#             list1       <- update_svImpactLists(
#               fpath0  = fpath1,
#               sectors = sectors1,
#               save    = T,
#               return  = F
#             )
#             '
# 
#       - name: Commit results
#         run: |
#           git config --local core.autocrlf false
#           git config --local user.email "${{ github.actor }}@users.noreply.github.com"
#           git config --local user.name  "${{ github.actor }}"
#           git add data/sv/impactsLists/**.rds
#           git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
#           git commit -a -m "Updated SV FrEDI impact lists for ${{ github.event.inputs.svSectors }}"
#           git push