compile_main_fredi_data.yml

### https://github.com/actions/upload-artifact
### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/
### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows
### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies
### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution
### For uploading artifacts:
###     "path:" is the output path where Pandoc will write the compiled PDF. 
###      Note, this should be the same directory as the input paper.md
name: Compile FrEDI Data

on: [push]
# on:
#   push:
#     inputs:
#       repo_url:
#         description: FrEDI repo URL
#         required: true
#         default: 
#      update:
#        type: choice
#        description: Update sysdata.rda
#        options: 
#        - no
#        - yes


jobs:
  compile_data:
    runs-on: ubuntu-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    
    name: Process Data
    steps:
      - name: Checkout
        uses: actions/checkout@v3
        
      - name: Setup R
        uses: r-lib/actions/setup-r@v2
      
      - name: Setup R package dependencies
        uses: r-lib/actions/setup-r-dependencies@v2
        with:
          cache: true
          cache-version: 1
          packages: |
            any::tidyverse
            any::remotes
            any::openxlsx
            any::devtools
      
      - name: Install FrEDI
        run: |
          Rscript -e '
            require(remotes)
            require(devtools)
            install_github( 
              repo    = "https://github.com/USEPA/FrEDI", 
              subdir  = "FrEDI", 
              ref     = "main", 
              type    = "source", 
              repos   = getOption("repos"), 
              upgrade = "never", 
              force   = TRUE 
            )'
          
      - name: Run createsystemData
        run: |
          Rscript -e 'source("./scripts/createSystemData_main.R")'
        
      - name: Upload Tests
        uses: actions/upload-artifact@v3
        with:
          name: Data
          path: |
            ./data_tests/
            ./data/tmp_sysdata.rda