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Merge the develop branch into the master branch #330

Merged
merged 125 commits into from
Nov 21, 2024
Merged

Merge the develop branch into the master branch #330

merged 125 commits into from
Nov 21, 2024

Commits on Jul 25, 2024

  1. Initial cleanup of oxidation state data files

    Added comment lines on dataset origins
    aronwalsh committed Jul 25, 2024
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  2. ICSD (2024) oxidation states

    Populated from ICSD API
    - raw count json
    - raw oxidation state list
    - filtered list with > 5 entries per oxidation state
    aronwalsh committed Jul 25, 2024
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Commits on Jul 27, 2024

  1. Create oxidation_states_icsd24_common.txt

    Add set that lists the oxidation state with the most results for each element
    aronwalsh committed Jul 27, 2024
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Commits on Jul 28, 2024

  1. Update oxidation_states_icsd24_counts.json

    Final list up to Lr
    aronwalsh committed Jul 28, 2024
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Commits on Aug 15, 2024

  1. Make the filtered 2024 icsd oxidation states available through data_l…

    …oader
    Anthony Onwuli committed Aug 15, 2024
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  4. Merge branch 'docs_updates' of https://github.com/WMD-group/SMACT int…

    …o oxidationstates24
    Anthony Onwuli committed Aug 15, 2024
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  5. created tutorials folder and moved SolarOxides.ipynb

    and Checking_smact_validity_of_GNoME.ipynb
    ryannduma committed Aug 15, 2024
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  6. Match Pan

    aronwalsh committed Aug 15, 2024
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  8. Add book theme and update requirements

    Anthony Onwuli committed Aug 15, 2024
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  9. smact-change-ts

    lits19 authored Aug 15, 2024
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  10. tweak utils

    aronwalsh committed Aug 15, 2024
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  11. Create validity.ipynb

    aronwalsh committed Aug 15, 2024
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  13. Add files via upload

    Panyalak authored Aug 15, 2024
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  14. Add files via upload

    Panyalak authored Aug 15, 2024
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  15. Create filter.ipynb

    aronwalsh committed Aug 15, 2024
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  20. adding notebook compatibility

    keeeto committed Aug 15, 2024
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  21. updating docs

    keeeto committed Aug 15, 2024
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  22. update docs

    keeeto committed Aug 15, 2024
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  23. Add oxidation states utility functions

    Anthony Onwuli committed Aug 15, 2024
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  24. renaming the tutorials

    ryannduma committed Aug 15, 2024
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  27. exmaples

    keeeto committed Aug 15, 2024
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  29. Pan changes

    aronwalsh committed Aug 15, 2024
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  31. Add test files

    Anthony Onwuli committed Aug 15, 2024
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  32. Update ICSD24OxStatesFilter

    Anthony Onwuli committed Aug 15, 2024
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  33. Add tests for utils/oxidation

    Anthony Onwuli committed Aug 15, 2024
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  34. Add html theme options (Repo link and launch buttons)

    Anthony Onwuli committed Aug 15, 2024
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  35. Update readthedocs.yaml

    Anthony Onwuli committed Aug 15, 2024
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  36. Update requirements files

    Anthony Onwuli committed Aug 15, 2024
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  37. Run pre-commit

    Anthony Onwuli committed Aug 15, 2024
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  38. Update readthedocs.yaml

    Anthony Onwuli committed Aug 15, 2024
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  39. Example polish #1

    aronwalsh committed Aug 15, 2024
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  40. Crystal space -> tutorials

    aronwalsh committed Aug 15, 2024
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  41. Examples -> Examples & Tutorials

    Initial update to README
    
    Some links to specific features should be checked later before merging new docs
    aronwalsh committed Aug 15, 2024
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  42. Update SMACT.png

    v3 logo
    aronwalsh committed Aug 15, 2024
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Commits on Aug 16, 2024

  1. toc and more docs

    keeeto committed Aug 16, 2024
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  3. tutorials add to docs

    keeeto committed Aug 16, 2024
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  4. remove other tutorials

    keeeto committed Aug 16, 2024
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  6. landing page

    keeeto committed Aug 16, 2024
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  7. Notebook updates

    aronwalsh committed Aug 16, 2024
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Commits on Aug 19, 2024

  1. Ruff fixes

    Anthony Onwuli committed Aug 19, 2024
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  2. Merge branch 'AntObi-ruff' into docs_updates

    Anthony Onwuli committed Aug 19, 2024
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  4. Merge conflicts

    AntObi committed Aug 19, 2024
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  5. Add back shebang

    AntObi committed Aug 19, 2024
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  7. Run pre-commit-hooks

    AntObi committed Aug 19, 2024
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Commits on Aug 20, 2024

  1. Add nbstripout to pre-commit

    AntObi committed Aug 20, 2024
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  2. Run nbstripout

    AntObi committed Aug 20, 2024
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  3. Add codespell to pre-commit

    AntObi committed Aug 20, 2024
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  4. Fix typos

    AntObi committed Aug 20, 2024
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  5. Add pyright to pre-commit

    AntObi committed Aug 20, 2024
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  7. Add blacken-docs to pre-commit

    AntObi committed Aug 20, 2024
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  9. Add keywords to pyproject.toml

    AntObi committed Aug 20, 2024
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  12. Update requirements.txt

    AntObi committed Aug 20, 2024
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  13. Update dev requirements file

    AntObi committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. Run pre-commit

    AntObi committed Aug 21, 2024
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  2. Update filter

    AntObi committed Aug 21, 2024
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  5. Add test for oxidation filter

    AntObi committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. google colab

    Panyalak authored Aug 22, 2024
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  2. google colab

    Panyalak authored Aug 22, 2024
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  3. google colab

    Panyalak authored Aug 22, 2024
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  4. google colab

    Panyalak authored Aug 22, 2024
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  5. google colab

    Panyalak authored Aug 22, 2024
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  6. google colab

    Panyalak authored Aug 22, 2024
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  7. Add __init__.py to utils

    AntObi committed Aug 22, 2024
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  8. Add utils as a package

    AntObi committed Aug 22, 2024
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  9. Run pre-commit

    AntObi committed Aug 22, 2024
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Commits on Aug 24, 2024

  1. Fixed ICSD24 List

    Regenerated ICSD24 dataset on oxidation states.
    
    API had returned 0 values for some species, whilst the web version showed results. Overcome by restarting the session for each search.
    
    "oxidation_states_icsd24_filtered" is recommended as the default
    aronwalsh committed Aug 24, 2024
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Commits on Aug 30, 2024

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  3. Update test files

    AntObi committed Aug 30, 2024
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  5. Pre-commit fixes

    AntObi committed Aug 30, 2024
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Commits on Aug 31, 2024

  1. Remove vec_example.py

    AntObi committed Aug 31, 2024
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  2. Add VEC example notebook

    AntObi committed Aug 31, 2024
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  3. Update rst

    AntObi committed Aug 31, 2024
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  4. Update documentation

    AntObi committed Aug 31, 2024
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  5. Update conf.py

    AntObi committed Aug 31, 2024
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  7. Update docs/introduction.rst

    Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
    AntObi and coderabbitai[bot] authored Aug 31, 2024
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  8. Fix link

    AntObi committed Aug 31, 2024
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  9. Add comments for clarity

    AntObi committed Aug 31, 2024
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Commits on Sep 1, 2024

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Commits on Sep 2, 2024

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  2. Update imports

    AntObi committed Sep 2, 2024
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  4. Ruff fix

    AntObi committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. Add test for convert_formulas

    AntObi committed Sep 3, 2024
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  2. Add optional dependencies

    AntObi committed Sep 3, 2024
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  3. Add docstring

    AntObi committed Sep 3, 2024
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Commits on Nov 19, 2024

  1. Merge pull request #309 from WMD-group/docs_updates

    [WIP] Documentation overhaul
    AntObi authored Nov 19, 2024
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Commits on Nov 20, 2024

  1. Run pre-commit

    AntObi committed Nov 20, 2024
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  2. Merge pull request #329 from WMD-group/oxidationstates24

    Oxidation States 24
    AntObi authored Nov 20, 2024
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  3. MERGE

    AntObi committed Nov 20, 2024
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    AntObi committed Nov 20, 2024
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Commits on Nov 21, 2024

  1. Fix misspelling in pyproject

    AntObi committed Nov 21, 2024
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