neuromorphometrics.json

[
   {
      "@type": "header",
      "@id": "NeuromorphometricsAtlas",
      "species" : "human",
      "hawgVersion" : "1.0",
      "license" : "CC BY-NC",
      "comment" : "Maximum probability tissue labels derived from the ‘MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labeling’ (https://masi.vuse.vanderbilt.edu/workshop2012/index.php/Challenge_Details). These data were released under the Creative Commons Attribution-NonCommercial (CC BY-NC) with no end date. Users should credit the MRI scans as originating from the OASIS project (http://www.oasis-brains.org/) and the labeled data as 'provided by Neuromorphometrics, Inc. (http://Neuromorphometrics.com/) under academic subscription'.  These references should be included in all workshop and final publications",
      "contact" : "mailto:aal2.gin.brainatlas@gmail.com",
      "coordinateSystem" : "MNI",
      "name" : "Neuromorphometrics",
      "sourceData" : "labels_Neuromorphometrics.nii",
      "citation" : "doi:10.1016/j.neuroimage.2015.07.075;doi:10.1006/nimg.2001.0978",
      "version" : "2",
      "organ" : "brain",
      "boogahboogah" : "http://braincolor.mindboggle.info/docs/BrainCOLOR_cortical_parcellation_protocol.pdf"
   },
   {
      "@id" : "atlasDataSourceRef1",
      "@type" : "datasource",
      "source" : "labels_Neuromorphometrics.nii",
      "mimeType" : "",
      "comment" : ""
   },
   {
      "@id" : "_3rdVentricle",
      "sourceSelector" : {
         "dataKey" : "4",
         "dataSource" : "atlasDataSourceRef1"
      },
      "annotation" : {
         "shortName" : "3rdVen",
         "description" : "Something about the structure",
         "name" : "Third Ventricle"
      },
      "@type" : "structure"
   },
   {
      "@id" : "_4thVentricle",
      "sourceSelector" : {
         "dataSource" : "atlasDataSourceRef1",
         "dataKey" : "11"
      },
      "annotation" : {
         "description" : "Something about the structure",
         "name" : "Fourth Ventricle",
         "shortName" : "4thVen"
      },
      "@type" : "structure"
   },
   {
      "@type" : "structure",
      "annotation" : {
         "shortName" : "BStem",
         "name" : "Brain Stem"
      },
      "sourceSelector" : {
         "dataKey" : "35",
         "dataSource" : "atlasDataSourceRef1"
      },
      "@id" : "BStem"
   },
   {
      "@type" : "structure",
      "annotation" : {
         "description" : "Something about the structure",
         "name" : "Left Hippocampus",
         "shortName" : "LHipp"
      },
      "sourceSelector" : {
         "dataSource" : "atlasDataSourceRef1",
         "dataKey" : "48"
      },
      "@id" : "LHipp"
   },
   {
      "sourceSelector" : {
         "dataSource" : "atlasDataSourceRef1",
         "dataKey" : "47"
      },
      "@id" : "RHipp",
      "@type" : "structure",
      "annotation" : {
         "shortName" : "RHipp",
         "name" : "Right Hippocampus",
         "description" : "Something about the structure"
      }
   },
   {
      "annotation" : {
         "name" : "Ventricles",
         "description" : "We intentionally group all ventricles together just to show how it would be done. This level of structure does not exist in the original atlas",
         "shortName" : "Ventricles"
      },
      "members" : [
         "_4thVentricle",
         "_3rdVentricle"
      ],
      "@type" : "group",
      "@id" : "Ventricles"
   },
   {
      "@id" : "Left",
      "@type" : "group",
      "members" : [
         "LHipp"
      ],
      "annotation" : {
         "shortName" : "Left",
         "description" : "This group contains all groups on the left of the brain.",
         "name" : "Left brain structures."
      }
   }
]