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@WayScience

The Way Lab

The Way Lab at CU Anschutz

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  1. phenotypic_profiling phenotypic_profiling Public

    Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles

    Jupyter Notebook 2 3

  2. nf1_schwann_cell_painting_data nf1_schwann_cell_painting_data Public

    This repository contains all the modules to perform image-based analysis with CellProfiler on NF1 Schwann cell data.

    Jupyter Notebook 5 6

  3. pyroptosis_signature_image_profiling pyroptosis_signature_image_profiling Public

    This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

    Jupyter Notebook 3 3

  4. coSMicQC coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    Python 7 3

  5. predicting-cell-injury-compounds predicting-cell-injury-compounds Public

    Processing cell-injury profiles using Pycytominer to generate selected features profiles for training a multi-class regression model to identify cellular injury.

    Jupyter Notebook 2

  6. CPBS7601 CPBS7601 Public

    Course on computing skills in biomedical informatics

    Jupyter Notebook 9

Repositories

Showing 10 of 78 repositories
  • pyroptosis_signature_data_analysis Public

    Analysis repository for the pyroptosis morphology map

    WayScience/pyroptosis_signature_data_analysis’s past year of commit activity
    Jupyter Notebook 3 BSD-3-Clause 1 15 1 Updated Feb 27, 2025
  • sc-tracking-optimization Public

    This repo aims to track cells in the best way possible

    WayScience/sc-tracking-optimization’s past year of commit activity
    0 BSD-3-Clause 1 0 0 Updated Feb 25, 2025
  • JUMP-single-cell Public

    Single cell analysis of the JUMP Cell Painting consortium pilot data (cpg0000)

    WayScience/JUMP-single-cell’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 5 0 2 Updated Feb 24, 2025
  • gene_dependency_representations Public
    WayScience/gene_dependency_representations’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 5 0 0 Updated Feb 24, 2025
  • pyroptosis_live-cell_timelapse Public
    WayScience/pyroptosis_live-cell_timelapse’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 1 0 Updated Feb 22, 2025
  • pediatric_cancer_atlas_analysis Public

    Image2Image Translation Model Optimization and Training to Predict Stains from Brightfield with Cell Painting Data

    WayScience/pediatric_cancer_atlas_analysis’s past year of commit activity
    0 BSD-3-Clause 1 0 1 Updated Feb 19, 2025
  • CFReT-screen-mAP-analysis Public

    Analysis notebooks applying mean average Precision (mAP) to the CFReT screen image-based profiles dataset.

    WayScience/CFReT-screen-mAP-analysis’s past year of commit activity
    Jupyter Notebook 0 1 3 0 Updated Feb 19, 2025
  • pediatric_cancer_atlas_profiling Public

    Image analysis and image-based profiling of pediatic cancer cell lines to extract morphological profiles.

    WayScience/pediatric_cancer_atlas_profiling’s past year of commit activity
    Jupyter Notebook 1 CC0-1.0 3 1 2 Updated Feb 18, 2025
  • CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    WayScience/CytoDataFrame’s past year of commit activity
    Python 1 BSD-3-Clause 2 14 0 Updated Feb 18, 2025
  • coSMicQC Public

    Single cell Morphology Quality Control (coSMicQC)

    WayScience/coSMicQC’s past year of commit activity
    Python 7 BSD-3-Clause 3 17 0 Updated Feb 18, 2025
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