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sampleInfo.example
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sampleInfo.example
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sample pop filename median_insert_size median_absolute_deviation min_insert_size max_insert_size mean_insert_size standard_deviation read_pairs pair_orientation mean_coverage granular_third_quartile_coverage granular_median_coverage granular_first_quartile_coverage perc_bases_above_15
HG00096 GBR /scratch/data/HG00096/alignment/HG00096.mapped.ILLUMINA.bwa.GBR.low_coverage.20120522.bam 182 13 1 242935653 179.814467 22.033335 69840414 FR 4.69 1 1 1 0.3
HG00097 GBR /scratch/data/HG00097/alignment/HG00097.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 298 47 1 236665975 311.391152 78.881308 143438038 FR 9.74 1 1 1 9.2
HG00099 GBR /scratch/data/HG00099/alignment/HG00099.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 272 39 1 242605424 281.291213 65.094938 119283666 FR 8.21 1 1 1 5.5
HG00100 GBR /scratch/data/HG00100/alignment/HG00100.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 401 56 1 242555614 397.279083 85.304412 192131793 FR 13.52 1 1 1 33.2
HG00101 GBR /scratch/data/HG00101/alignment/HG00101.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 355 26 1 242936105 354.052565 42.810666 103896826 FR 7.16 1 1 1 1.6
HG00102 GBR /scratch/data/HG00102/alignment/HG00102.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 348 24 1 245095606 345.448138 42.816054 101742959 FR 7.04 1 1 1 1.5
HG00103 GBR /scratch/data/HG00103/alignment/HG00103.mapped.ILLUMINA.bwa.GBR.low_coverage.20120522.bam 171 14 1 236807482 169.641 22.076763 76995432 FR 5.15 1 1 1 0.5
HG00105 GBR /scratch/data/HG00105/alignment/HG00105.mapped.ILLUMINA.bwa.GBR.low_coverage.20130415.bam 352 23 1 242894070 343.991933 53.387586 106239655 FR 7.25 1 1 1 1.7
HG00106 GBR /scratch/data/HG00106/alignment/HG00106.mapped.ILLUMINA.bwa.GBR.low_coverage.20121211.bam 366 31 1 242551118 361.498437 58.568002 109688999 FR 7.70 1 1 1 2.4