From d91dbe645225c7e683a0fbb980d0b5e0067bfc6b Mon Sep 17 00:00:00 2001 From: John Gerrard Holland Date: Wed, 22 Jan 2025 19:05:41 +0000 Subject: [PATCH 1/3] fix(workflow): re-add missing exportH5 task --- workflow/flow.cylc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/flow.cylc b/workflow/flow.cylc index 653ca52..b10a29d 100644 --- a/workflow/flow.cylc +++ b/workflow/flow.cylc @@ -17,7 +17,7 @@ """ P1D = """ get_all_overpass_times[^] => get_single_overpass_time - INIT[^]:succeed-all => LOAD:succeed-all => PREPROCESS:succeed-all => exportH5 => done + INIT[^]:succeed-all => LOAD:succeed-all => PREPROCESS:succeed-all => exportH5 => done done[-P1D] => done """ From fc41dd1d6f4be23ab821fb14eae2a2480d17ca17 Mon Sep 17 00:00:00 2001 From: John Gerrard Holland Date: Wed, 22 Jan 2025 19:06:20 +0000 Subject: [PATCH 2/3] fix(workflow): simplify passtime emitted to file --- workflow/flow.cylc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/flow.cylc b/workflow/flow.cylc index b10a29d..d4a43fa 100644 --- a/workflow/flow.cylc +++ b/workflow/flow.cylc @@ -290,7 +290,7 @@ # Package intermediate and final outputs into HDF5 files script = """ ${IFT} makeh5files_single \ - --passtime `cat ${overpass_time_file}` \ + --passtime "$(cat ${overpass_time_file} | tr -d 'Z\n\r')" \ --truecolor ${truecolor_file} \ --falsecolor ${falsecolor_file} \ --labeled ${labeled_file} \ From 365556dcdac510f13a2a133082901b58e114ba3c Mon Sep 17 00:00:00 2001 From: John Gerrard Holland Date: Wed, 22 Jan 2025 19:23:14 +0000 Subject: [PATCH 3/3] refactor(workflow): remove -o short option from h5 single CLI --- IFTPipeline.jl/src/cli.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/IFTPipeline.jl/src/cli.jl b/IFTPipeline.jl/src/cli.jl index 5d0fb06..495a583 100755 --- a/IFTPipeline.jl/src/cli.jl +++ b/IFTPipeline.jl/src/cli.jl @@ -340,7 +340,7 @@ function mkclimakeh5_single!(settings) required = true arg_type = String - "--output", "-o" + "--output" help = "Output file" required = true end