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environment.yml
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name: pt12
channels:
- pytorch
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- abseil-cpp=20211102.0=hd4dd3e8_0
- absl-py=1.4.0=py38h06a4308_0
- aiohttp=3.8.3=py38h5eee18b_0
- aiosignal=1.2.0=pyhd3eb1b0_0
- appdirs=1.4.4=pyhd3eb1b0_0
- async-timeout=4.0.2=py38h06a4308_0
- blas=1.0=mkl
- blinker=1.4=py38h06a4308_0
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.0=h5eee18b_0
- ca-certificates=2023.12.12=h06a4308_0
- cachetools=4.2.2=pyhd3eb1b0_0
- certifi=2023.11.17=py38h06a4308_0
- cffi=1.15.0=py38h7f8727e_0
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.0.4=py38h06a4308_0
- cryptography=39.0.1=py38h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- ffmpeg=4.3=hf484d3e_0
- freetype=2.12.1=h4a9f257_0
- frozenlist=1.3.3=py38h5eee18b_0
- future=0.18.3=py38h06a4308_0
- giflib=5.2.1=h5eee18b_3
- gmp=6.2.1=h295c915_3
- gnutls=3.6.15=he1e5248_0
- google-auth=2.6.0=pyhd3eb1b0_0
- google-auth-oauthlib=0.4.4=pyhd3eb1b0_0
- grpc-cpp=1.48.2=h5bf31a4_0
- grpcio=1.48.2=py38h5bf31a4_0
- idna=3.4=py38h06a4308_0
- intel-openmp=2021.4.0=h06a4308_3561
- joblib=1.2.0=py38h06a4308_0
- jpeg=9e=h5eee18b_1
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- lerc=3.0=h295c915_0
- libdeflate=1.17=h5eee18b_0
- libedit=3.1.20221030=h5eee18b_0
- libffi=3.2.1=hf484d3e_1007
- libgcc-ng=11.2.0=h1234567_1
- libgfortran-ng=11.2.0=h00389a5_1
- libgfortran5=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h7f8727e_2
- libidn2=2.3.4=h5eee18b_0
- libpng=1.6.39=h5eee18b_0
- libprotobuf=3.20.3=he621ea3_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.0=h6a678d5_2
- libunistring=0.9.10=h27cfd23_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- lz4-c=1.9.4=h6a678d5_0
- markdown=3.4.1=py38h06a4308_0
- markupsafe=2.1.1=py38h7f8727e_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- multidict=6.0.2=py38h5eee18b_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- ninja=1.10.2=h06a4308_5
- ninja-base=1.10.2=hd09550d_5
- numpy-base=1.21.5=py38ha15fc14_3
- oauthlib=3.2.2=py38h06a4308_0
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1w=h7f8727e_0
- packaging=23.0=py38h06a4308_0
- pip=23.1.2=py38h06a4308_0
- pooch=1.4.0=pyhd3eb1b0_0
- protobuf=3.20.3=py38h6a678d5_0
- pyasn1=0.4.8=pyhd3eb1b0_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pyjwt=2.4.0=py38h06a4308_0
- pyopenssl=23.0.0=py38h06a4308_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.0=h0371630_2
- pytorch=1.12.1=py3.8_cuda11.3_cudnn8.3.2_0
- pytorch-mutex=1.0=cuda
- pyyaml=6.0=py38h5eee18b_1
- re2=2022.04.01=h295c915_0
- readline=7.0=h7b6447c_5
- requests=2.29.0=py38h06a4308_0
- requests-oauthlib=1.3.0=py_0
- rsa=4.7.2=pyhd3eb1b0_1
- scikit-learn=1.0.2=py38h51133e4_1
- scipy=1.10.1=py38h14f4228_0
- setuptools=67.8.0=py38h06a4308_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.33.0=h62c20be_0
- tensorboard=2.11.0=py38h06a4308_0
- tensorboard-data-server=0.6.1=py38h52d8a92_0
- tensorboard-plugin-wit=1.8.1=py38h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.12=h1ccaba5_0
- torchaudio=0.12.1=py38_cu113
- torchvision=0.13.1=py38_cu113
- typing-extensions=4.6.3=py38h06a4308_0
- typing_extensions=4.6.3=py38h06a4308_0
- urllib3=1.26.16=py38h06a4308_0
- werkzeug=2.2.3=py38h06a4308_0
- wheel=0.38.4=py38h06a4308_0
- xz=5.4.2=h5eee18b_0
- yaml=0.2.5=h7b6447c_0
- yarl=1.8.1=py38h5eee18b_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- anndata==0.9.1
- attrs==23.1.0
- beautifulsoup4==4.12.2
- bioservices==1.11.2
- blosc2==2.0.0
- cattrs==23.1.2
- colorama==0.4.6
- colorlog==6.7.0
- contourpy==1.1.0
- cycler==0.11.0
- cython==0.29.36
- dgl==1.1.1
- dunamai==1.18.0
- easydev==0.12.1
- et-xmlfile==1.1.0
- exceptiongroup==1.1.2
- fonttools==4.41.0
- get-annotations==0.1.2
- get-version==3.5.4
- gevent==23.7.0
- greenlet==2.0.2
- grequests==0.7.0
- gseapy==0.10.8
- h5py==3.9.0
- igraph==0.11.4
- importlib-metadata==6.8.0
- importlib-resources==6.0.0
- jinja2==3.1.2
- kiwisolver==1.4.4
- legacy-api-wrap==1.2
- leidenalg==0.10.2
- llvmlite==0.40.1
- lxml==4.9.3
- matplotlib==3.7.2
- msgpack==1.0.5
- natsort==8.4.0
- networkx==3.1
- nltk==3.8.1
- numba==0.57.1
- numexpr==2.8.4
- numpy==1.24.4
- openpyxl==3.1.2
- pandas==2.0.3
- patsy==0.5.3
- pexpect==4.8.0
- pillow==10.0.0
- platformdirs==3.8.1
- psutil==5.9.5
- ptyprocess==0.7.0
- py-cpuinfo==9.0.0
- pygcl==0.1.2
- pynndescent==0.5.10
- pyparsing==3.0.9
- python-dateutil==2.8.2
- pytz==2023.3
- rdkit==2023.9.6
- regex==2024.5.15
- requests-cache==1.1.0
- scanpy==1.9.8
- seaborn==0.13.2
- session-info==1.0.0
- sinfo==0.3.4
- soupsieve==2.4.1
- statsmodels==0.14.0
- stdlib-list==0.9.0
- suds-community==1.1.2
- tables==3.8.0
- texttable==1.7.0
- torch-geometric==2.3.1
- torch-scatter==2.1.0+pt112cu113
- torch-sparse==0.6.15+pt112cu113
- tqdm==4.65.0
- tzdata==2023.3
- umap-learn==0.5.3
- url-normalize==1.4.3
- wordcloud==1.9.3
- wrapt==1.15.0
- xlrd==2.0.1
- xmltodict==0.13.0
- zipp==3.16.1
- zope-event==5.0
- zope-interface==6.0
prefix: /data/yuweiming/Anaconda/envs/pt12