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NEWS.md

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enmSdmX 1.1.10 2024-11-06

  • trainNS() works when the number of predictors is >2 and interactions are allowed between variables (thank you again, Pascal!).

enmSdmX 1.1.9 2024-11-01

  • trainGAM() does not include interaction terms if interaction is NULL, and does not fail when interactions are included and the number of predictors is >2 (thank you, Pascal!).

enmSdmX 1.1.8 2024-10-02

  • modelSize() can now tell size of a ranger random forest.

enmSdmX 1.1.7 2024-08-02

  • Clarified mis-leading help in several functions, including all the trainXYZ() functions (thank you, PT!).

enmSdmX 1.1.6 2024-06-06

  • Replaced dependency on MuMIn with one one AICcmodavg for calculation of AICc. Received warning that MuMIn was going to be archived on CRAN.

enmSdmX 1.1.5 2024-05-16

  • Added function trainESM() for ensembles of small models.
  • Added several UTM coordinate reference systems accessible through getCRS().
  • Fixed bug in predictEnmSdm() for predicting kernel density models from the ks package.

enmSdmX 1.1.3 2023-03-06

  • trainGLM(), trainNS(), and predictEnmSdm() now have options to automatically center and scale predictors. If a GLM or NS model created using trainGLM() or trainSN() is provided to predictEnmSdm(), it will automatically scale the predictors properly.

enmSdmX 1.1.3 2023-02-02

  • Removed dependency on dismo, replaced where possible by predicts; copied gbm.step() and predict() method for MaxEnt to enmSdmX as a momentary fix; would love a professional solution!
  • Added European Datum 1950 (ED50) to coordinate reference systems table
  • Added ability to export intermediate values for plotting in evalContBoyce()
  • Fixed spelling errors in crss data table (coordinate reference system names)

enmSdmX 1.1.2 2023-09-07

  • Minor issue fixes with undocumented arguments for non-exported functions
  • Bug fix in squareCellRast() that occurred on Linux/Fedora

enmSdmX 1.1.1 2023-06-11

  • Backwards incompatible: trainRF() uses ranger package for random forests (changed from randomForest package)
  • Backwards incompatible: geoFold() uses complete clustering method by default (changed from single)
  • New feature: trainGLM() and trainNS() can automatically scale predictors
  • New feature: Reworked trainGLM() to handle cases with large numbers of predictors
  • New feature: Added geoFoldContrast() for assigning geo-folds to background or absence sites
  • Better functionality: trainRF() now indicates if the response is binary using a binary argument (vs. family, which falsely implied more functionality than RFs have)

enmSdmX 1.0.6 2023-05-22

  • Better functionality: Expanded capacity of .calcWeights() (a hidden function) to handle different values for family

enmSdmX 1.0.5 2023-05-12

  • new feature: Added help page for troubleshooting running functions that support parallel operation
  • Bug fix: predictEnmSdm() when using a BRT model and predicting to a SpatRaster (thank you, Nikki C!)

enmSdmX 1.0.4 2023-04-10

  • New feature: Users can select clustering method in geoThin() and geoFold() (thank you, Pascal T!)
  • Bug fix: Example in customCRS() when GADM server is down
  • Bug fix:geoThin() which returned input if it was a data.frame*
  • Bug fix:geoThin() which returned a data.frame lacking coordinates if input was a data.frame (thank you, Pascal T!)

enmSdmX 1.0.3 2023-03-07

  • Bug fix: Removed Fedora issue with external link to raster package
  • Bug fix: Added rJava dependency

enmSdmX 1.0.2 2023-03-04

  • New feature: getCRS() (no arguments) now displays shiny table of all available CRSs
  • Bug fix: Fixed issue in nearestGeogPoints() when polygon lay under centroid
  • Bug fix: Fixed bug with "table" call of getCRS()

enmSdmX 1.0.1

  • New feature: summarizeByCrossValid() now summarizes natural spline (NS) models
  • Bug fix: Bug experienced by some users using predictEnmSdm() and predictMaxNet() (Thank you, Nikki!)
  • Bug fix: trainByCrossValid() using improper call to evalContBoyce()
  • Bug fix: extract() bug in some examples

enmSdmX 1.0.0

  • First release on CRAN