requirements.dev.conda.yml

name: tiatoolbox-dev
channels:
  - conda
  - conda-forge
  - pytorch
  - defaults
dependencies:
  - albumentations>=1.0.3
  - black>=22.3.0
  - bump2version==1.0.1
  - Click>=8.1.2
  - coverage==6.3.2
  - cython
  - defusedxml>=0.7.1
  - flake8==4.0.1
  - flake8-bugbear
  - flask>=2.1.1
  - glymur>=0.9.9
  - imagecodecs>=2021.11.20
  - jupyterlab
  - matplotlib>=3.5.1
  - nbsphinx
  - numpy>=1.21.5
  - opencv>=4.5.5
  - openjpeg>=2.4.0
  - openslide
  - pandas>=1.3.5
  - pillow>=9.0.1
  - pip>=20.0.2
  - pixman>=0.39.0
  - pre-commit
  - pydicom>=2.3.0 # Used by wsidicom
  - pytest-cov==3.0.0
  - pytest-runner>=5.2
  - pytest>=6.2.5
  - python>=3.7
  - pytorch>=1.11.0
  - pyyaml>=6.0
  - recommonmark
  - requests>=2.27.1
  - scikit-image>=0.19.2
  - scikit-learn>=1.0.2
  - shapely>=1.8.1
  - sphinx-gallery
  - tifffile>=2021.11.2
  - toml==0.10.2
  - torchvision>=0.12.0
  - tox
  - tqdm>=4.63.1
  - twine==4.0.0
  - umap-learn>=0.5.2
  - wheel==0.37.1
  - zarr>=2.11.1
  - pip:
      - openslide-python>=1.1.2
      - wsidicom>=0.2.0
      - sphinx-toolbox