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environment.yaml
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name: derp
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- abseil-cpp=20230802.0=h6a678d5_2
- aioeasywebdav=2.4.0=pyha770c72_0
- aiohttp=3.9.1=py310h2372a71_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alembic=1.8.1=py310h06a4308_0
- amply=0.1.6=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- asttokens=2.0.5=pyhd3eb1b0_0
- async-timeout=4.0.3=pyhd8ed1ab_0
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=23.2.0=pyh71513ae_0
- bcrypt=4.1.2=py310hcb5633a_0
- biopython=1.78=py310h7f8727e_0
- black=23.11.0=py310h06a4308_0
- blas=1.0=openblas
- blis=0.9.0=hd590300_1
- boto3=1.34.23=pyhd8ed1ab_0
- botocore=1.34.23=pyhd8ed1ab_0
- bottleneck=1.3.5=py310ha9d4c09_0
- brotli=1.0.9=h5eee18b_7
- brotli-bin=1.0.9=h5eee18b_7
- brotli-python=1.0.9=py310hd8f1fbe_7
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.25.0=hd590300_0
- ca-certificates=2024.3.11=h06a4308_0
- cachetools=5.3.2=pyhd8ed1ab_0
- certifi=2024.6.2=py310h06a4308_0
- cffi=1.16.0=py310h2fee648_0
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=py310h06a4308_0
- coin-or-cbc=2.10.10=hd28fd6d_0
- coin-or-cgl=0.60.3=he7e83c3_1
- coin-or-clp=1.17.6=h232ff3c_2
- coin-or-osi=0.108.6=h1bc370f_1
- coin-or-utils=2.11.4=h573740c_2
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- colorlog=5.0.1=py310h06a4308_1
- configargparse=1.7=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.2.0=py310hdb19cb5_0
- cryptography=41.0.7=py310hb8475ec_1
- cycler=0.11.0=pyhd3eb1b0_0
- datrie=0.8.2=py310h2372a71_7
- decorator=5.1.1=pyhd3eb1b0_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.20.1=py310hff52083_3
- dpath=2.1.6=pyha770c72_0
- dropbox=11.36.2=pyhd8ed1ab_0
- eido=0.2.2=pyhd8ed1ab_0
- exceptiongroup=1.2.0=pyhd8ed1ab_2
- executing=0.8.3=pyhd3eb1b0_0
- expat=2.6.2=h6a678d5_0
- filechunkio=1.8=py_2
- filelock=3.13.1=py310h06a4308_0
- font-ttf-dejavu-sans-mono=2.37=hd3eb1b0_0
- font-ttf-inconsolata=2.001=hcb22688_0
- font-ttf-source-code-pro=2.030=hd3eb1b0_0
- font-ttf-ubuntu=0.83=h8b1ccd4_0
- fontconfig=2.14.1=h4c34cd2_2
- fonts-anaconda=1=h8fa9717_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.12.1=h4a9f257_0
- frozenlist=1.4.1=py310h2372a71_0
- fsspec=2023.10.0=py310h06a4308_0
- ftputil=5.1.0=pyhd8ed1ab_0
- giflib=5.2.1=h5eee18b_3
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.41=pyhd8ed1ab_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py310heeb90bb_0
- google-api-core=2.15.0=pyhd8ed1ab_0
- google-api-python-client=2.114.0=pyhd8ed1ab_0
- google-auth=2.26.2=pyhca7485f_0
- google-auth-httplib2=0.2.0=pyhd8ed1ab_0
- google-cloud-core=2.4.1=pyhd8ed1ab_0
- google-cloud-storage=2.14.0=pyhca7485f_0
- google-crc32c=1.1.2=py310hc5c09a0_5
- google-resumable-media=2.7.0=pyhd8ed1ab_0
- googleapis-common-protos=1.62.0=pyhd8ed1ab_0
- greenlet=3.0.1=py310h6a678d5_0
- grpc-cpp=1.48.2=he1ff14a_4
- grpcio=1.48.2=py310he1ff14a_4
- gtest=1.14.0=hdb19cb5_0
- h5py=3.11.0=py310hbe37b52_0
- hdf5=1.12.1=h2b7332f_3
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=pyhd8ed1ab_6
- icu=73.1=h6a678d5_0
- idna=3.6=pyhd8ed1ab_0
- importlib_resources=6.1.1=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- ipython=8.20.0=py310h06a4308_0
- jedi=0.18.1=py310h06a4308_1
- jinja2=3.1.3=pyhd8ed1ab_0
- jmespath=1.0.1=pyhd8ed1ab_0
- joblib=1.4.0=py310h06a4308_0
- jpeg=9e=h5eee18b_1
- jsonschema=4.21.1=pyhd8ed1ab_0
- jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- jupyter_core=5.7.1=py310hff52083_0
- kaleido-core=0.2.1=h7c8854e_0
- kiwisolver=1.4.4=py310h6a678d5_0
- krb5=1.20.1=h143b758_1
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libblas=3.9.0=21_linux64_openblas
- libbrotlicommon=1.0.9=h5eee18b_7
- libbrotlidec=1.0.9=h5eee18b_7
- libbrotlienc=1.0.9=h5eee18b_7
- libcblas=3.9.0=21_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=8.7.1=h251f7ec_0
- libdeflate=1.17=h5eee18b_1
- libedit=3.1.20230828=h5eee18b_0
- libev=4.33=h7f8727e_1
- libffi=3.4.4=h6a678d5_0
- libgcc-ng=13.2.0=h807b86a_3
- libgfortran-ng=13.2.0=h69a702a_3
- libgfortran5=13.2.0=ha4646dd_3
- libgomp=13.2.0=h807b86a_3
- liblapack=3.9.0=21_linux64_openblas
- liblapacke=3.9.0=21_linux64_openblas
- libnghttp2=1.57.0=h2d74bed_0
- libopenblas=0.3.26
- libpng=1.6.39=h5eee18b_0
- libprotobuf=3.20.3=he621ea3_0
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.11.0=h251f7ec_0
- libstdcxx-ng=13.2.0=h7e041cc_3
- libtiff=4.5.1=h6a678d5_0
- libuuid=1.41.5=h5eee18b_0
- libwebp=1.3.2=h11a3e52_0
- libwebp-base=1.3.2=h5eee18b_0
- libxml2=2.10.4=hf1b16e4_1
- libxslt=1.1.37=h5eee18b_1
- logmuse=0.2.6=pyh8c360ce_0
- lxml=4.9.3=py310hdbbb534_0
- lz4-c=1.9.4=h6a678d5_0
- mako=1.2.3=py310h06a4308_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.4=py310h2372a71_0
- mathjax=2.7.5=h06a4308_0
- matplotlib-base=3.7.1=py310h1128e8f_1
- matplotlib-inline=0.1.6=py310h06a4308_0
- mdurl=0.1.2=pyhd8ed1ab_0
- mizani=0.9.2=py310h06a4308_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py310h06a4308_0
- multidict=6.0.4=py310h2372a71_1
- munkres=1.1.4=py_0
- mypy_extensions=1.0.0=py310h06a4308_0
- mysql-connector-c=6.1.11=h659d440_1008
- mysqlclient=2.0.3=py310h295c915_1
- nbformat=5.9.2=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- networkx=3.1=py310h06a4308_0
- ninja=1.10.2=h06a4308_5
- ninja-base=1.10.2=hd09550d_5
- nomkl=1.0=h5ca1d4c_0
- nspr=4.35=h6a678d5_0
- nss=3.89.1=h6a678d5_0
- numexpr=2.8.0=py310hf05e7a9_102
- numpy=1.26.3=py310hb13e2d6_0
- oauth2client=4.1.3=py_0
- openjpeg=2.4.0=h3ad879b_0
- openssl=3.2.0=hd590300_1
- optuna=3.6.0=pyhd8ed1ab_0
- packaging=23.2=pyhd8ed1ab_0
- palettable=3.3.0=pyhd3eb1b0_0
- pandas=2.1.4=py310h1128e8f_0
- paramiko=3.4.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd3eb1b0_0
- pathspec=0.10.3=py310h06a4308_0
- patsy=0.5.3=py310h06a4308_0
- peppy=0.40.1=pyhd8ed1ab_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pillow=10.0.1=py310ha6cbd5a_0
- pip=23.3.1=py310h06a4308_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- plac=1.4.2=pyhd8ed1ab_0
- platformdirs=4.1.0=pyhd8ed1ab_0
- plotly=5.19.0=py310h2f386ee_0
- plotnine=0.12.1=py310h06a4308_0
- pluggy=1.3.0=pyhd8ed1ab_0
- ply=3.11=py_1
- prettytable=3.9.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.43=py310h06a4308_0
- prompt_toolkit=3.0.43=hd3eb1b0_0
- protobuf=3.20.3=py310h6a678d5_0
- psutil=5.9.8=py310h2372a71_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pulp=2.7.0=py310hff52083_1
- pure_eval=0.2.2=pyhd3eb1b0_0
- pyasn1=0.5.1=pyhd8ed1ab_0
- pyasn1-modules=0.3.0=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.17.2=pyhd8ed1ab_0
- pynacl=1.5.0=py310h2372a71_3
- pyopenssl=23.3.0=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.4.4=pyhd8ed1ab_0
- python=3.10.13=h955ad1f_0
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.19.1=pyhd8ed1ab_0
- python-irodsclient=1.1.9=pyhd8ed1ab_0
- python-kaleido=0.2.1=py310h06a4308_0
- python-tzdata=2023.3=pyhd3eb1b0_0
- python_abi=3.10=2_cp310
- pytorch=2.1.0=cpu_py310hab5cca8_0
- pytz=2023.3.post1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=6.0.1=py310h2372a71_1
- re2=2022.04.01=h27087fc_0
- readline=8.2=h5eee18b_0
- referencing=0.32.1=pyhd8ed1ab_0
- requests=2.31.0=pyhd8ed1ab_0
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.7.0=pyhd8ed1ab_0
- rpds-py=0.17.1=py310hcb5633a_0
- rsa=4.9=pyhd8ed1ab_0
- s3transfer=0.10.0=pyhd8ed1ab_0
- scikit-learn=1.4.2=py310h1128e8f_1
- scipy<1.12.0
- setuptools=68.2.2=py310h06a4308_0
- setuptools-scm=8.0.4=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.4.0=pyhd8ed1ab_0
- smmap=5.0.0=pyhd8ed1ab_0
- snakemake=7.32.4=hdfd78af_1
- snakemake-minimal=7.32.4=pyhdfd78af_1
- sqlalchemy=2.0.25=py310h5eee18b_0
- sqlite=3.41.2=h5eee18b_0
- stack_data=0.2.0=pyhd3eb1b0_0
- statsmodels=0.14.0=py310ha9d4c09_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- sympy=1.12=py310h06a4308_0
- tabulate=0.9.0=pyhd8ed1ab_1
- tenacity=8.2.2=py310h06a4308_0
- threadpoolctl=2.2.0=pyh0d69192_0
- throttler=1.2.2=pyhd8ed1ab_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- tqdm=4.66.2=py310h2f386ee_0
- traitlets=5.14.1=pyhd8ed1ab_0
- typing-extensions=4.9.0=hd8ed1ab_0
- typing_extensions=4.9.0=pyha770c72_0
- tzdata=2023d=h04d1e81_0
- ubiquerg=0.6.3=pyhd8ed1ab_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.18=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.13=pyhd8ed1ab_0
- wheel=0.41.2=py310h06a4308_0
- wrapt=1.16.0=py310h2372a71_0
- xz=5.4.5=h5eee18b_0
- yaml=0.2.5=h7f98852_2
- yarl=1.9.4=py310h2372a71_0
- yte=1.5.4=pyha770c72_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h5eee18b_0
- zstd=1.5.5=hc292b87_0
- pip:
- pymysql==1.1.1