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Feature Annotation
nchernia edited this page Feb 9, 2017
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Our feature annotation algorithms all operate on a .hic file. You can use Pre to create a .hic file from your data; alternatively, all the algorithms work on URLs as well, so you can use the links in the Aiden Lab Hi-C Archive to operate directly on that data without downloading it.
Click below to learn more about
- Arrowhead for finding contact domains
- HiCCUPS for discovering locally enriched peaks
- MotifFinder for anchoring peaks
- Pearsons for calculating the Pearson's correlation matrix of the Observed / Expected
- Eigenvector for determining compartments