From 7e92d014599e32c0b9128c1f66040487d2921328 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:31:10 +0900 Subject: [PATCH 1/7] Update README.md --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 586c1c2..fa67aa9 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,8 @@ # NANDO NANDO（Nanbyo Disease Ontology）は，「指定難病」制度対象の疾患と「小児慢性特定疾病」制度対象の疾患について，国内においてオーソライズされた資料を元に，疾患概念と疾患同士の関係性を厳密に体系化したものである．また，国際的な疾患オントロジーMONDOへのクロスリファレンスを含む． +The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes vocabulary related to rare diseases, the relationships between these diseases, and their connections with other disease resources. Includes cross-references to the international disease ontology, MONDOMONDO. + ## 取得 - http://nanbyodata.jp/ontology/nando.ttl - http://nanbyodata.jp/ontology/nando.rdf From 1432fba1f6b66bf2d13ef1d7c6fd5335ae72daad Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:35:56 +0900 Subject: [PATCH 2/7] Update README.md --- README.md | 20 ++++++++++++++------ 1 file changed, 14 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index fa67aa9..e7b954a 100644 --- a/README.md +++ b/README.md @@ -3,11 +3,11 @@ NANDO（Nanbyo Disease Ontology）は，「指定難病」制度対象の疾患 The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes vocabulary related to rare diseases, the relationships between these diseases, and their connections with other disease resources. Includes cross-references to the international disease ontology, MONDOMONDO. -## 取得 +## 取得/Down loads - http://nanbyodata.jp/ontology/nando.ttl - http://nanbyodata.jp/ontology/nando.rdf -## 参照 +## 参照/References - http://nanbyodata.jp/ontology/nando - http://bioportal.bioontology.org/ontologies/NANDO @@ -29,10 +29,8 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca ## 統計情報 || 全疾患 | 指定難病 | 小児慢性特定疾病 | | --- | ---: | ---: | ---: | -| クラス数 | `2,347` | `1,023` | `1,323` | -| 英語表記を含むクラス数 | `2,284` | `991` | `1,292` | -| 疾患定義を含むクラス数 | `1,189` | `333` | `856` | -| MONDOへのクロスリファレンスを含むクラス数 | `1,382` | `698` | `684` | +| クラス数 | `2,777` | `1,099` | `1,676` | +| MONDOへのクロスリファレンスを含むクラス数 | `2154` | `892` | `1262` | ## ライセンス CC-BY 4.0 | DBCLS @@ -46,7 +44,17 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca - 小児慢性特定疾病情報センター「概要」（https://www.shouman.jp/disease/search/group/)
（2020年7月14日に利用） - 小児慢性特定疾病情報センター「意見書」（https://www.shouman.jp/disease/search/group/)
（2020年7月14日に利用） +- Sources +- Ministry of Health, Labour and Welfare, "Overview, Diagnostic Criteria, etc." (Accessed July 14, 2020) +- Ministry of Health, Labour and Welfare, "Clinical Survey Individual Sheet" (Accessed July 14, 2020) +- Center for Chronic Pediatric Diseases, "Overview" (Accessed July 14, 2020) +- Center for Chronic Pediatric Diseases, "Opinion Paper" (Accessed July 14, 2020) + ## 謝辞 - 本オントロジーの構築に際してDDrareおよびRDVJを参照した． - 本オントロジーの構築にBioHackathonの成果を利用した． + +- Acknowledgements +The construction of this ontology was informed by references to DDrare and RDVJ. The results from the BioHackathon were also utilized in building this ontology. + From 97ae2cae6cf1919235dacbd3f1071d71d28d1e06 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:38:39 +0900 Subject: [PATCH 3/7] Update README.md --- README.md | 12 +++++------- 1 file changed, 5 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index e7b954a..478953f 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca - http://nanbyodata.jp/ontology/nando - http://bioportal.bioontology.org/ontologies/NANDO -## 作成 +[](## 作成 #### 1. 設定 (Macで検証済み) - `$ brew install raptor` - `$ pipenv install` @@ -24,7 +24,7 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca 1. RDF - `$ rapper -i turtle -o rdfxml-abbrev results/nando.ttl > results/nando.rdf` 1. HTML - - `$ xsltproc --output results/nando.html data/owl2xhtml.xsl results/nando.rdf` + - `$ xsltproc --output results/nando.html data/owl2xhtml.xsl results/nando.rdf`) ## 統計情報 || 全疾患 | 指定難病 | 小児慢性特定疾病 | @@ -38,23 +38,21 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca ## コンタクト 新しい用語のリクエストやクラスの修正依頼，オントロジーに関する問題点・疑問点の報告には，本リポジトリの Issue tracker をご利用ください． -## 出典 +## 出典/sources - 「概要、診断基準等」（厚生労働省）（https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000084783.html)
（2020年7月14日に利用） - 「臨床調査個人票」（厚生労働省）（https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000084783.html)
（2020年7月14日に利用） - 小児慢性特定疾病情報センター「概要」（https://www.shouman.jp/disease/search/group/)
（2020年7月14日に利用） - 小児慢性特定疾病情報センター「意見書」（https://www.shouman.jp/disease/search/group/)
（2020年7月14日に利用） -- Sources - Ministry of Health, Labour and Welfare, "Overview, Diagnostic Criteria, etc." (Accessed July 14, 2020) - Ministry of Health, Labour and Welfare, "Clinical Survey Individual Sheet" (Accessed July 14, 2020) - Center for Chronic Pediatric Diseases, "Overview" (Accessed July 14, 2020) - Center for Chronic Pediatric Diseases, "Opinion Paper" (Accessed July 14, 2020) -## 謝辞 +## 謝辞/Acknowledgements - 本オントロジーの構築に際してDDrareおよびRDVJを参照した． - 本オントロジーの構築にBioHackathonの成果を利用した． -- Acknowledgements -The construction of this ontology was informed by references to DDrare and RDVJ. The results from the BioHackathon were also utilized in building this ontology. +- The construction of this ontology was informed by references to DDrare and RDVJ. The results from the BioHackathon were also utilized in building this ontology. From 1d6226324d9b18be1648b135306bdc37bb9abce4 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:41:02 +0900 Subject: [PATCH 4/7] Update README.md --- README.md | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 478953f..152d999 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,8 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca - http://nanbyodata.jp/ontology/nando - http://bioportal.bioontology.org/ontologies/NANDO -[](## 作成 + ## 統計情報 || 全疾患 | 指定難病 | 小児慢性特定疾病 | From f38f713c0974bd1ed9e5b5300799546ec8030841 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:43:53 +0900 Subject: [PATCH 5/7] Update README.md --- README.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 152d999..880074f 100644 --- a/README.md +++ b/README.md @@ -29,11 +29,11 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca --> -## 統計情報 -|| 全疾患 | 指定難病 | 小児慢性特定疾病 | +## 統計情報/Statistics +|| 全疾患/All | 指定難病/Designated Intractable Diseases | 小児慢性特定疾病/Specified Chronic Diseases of Children | | --- | ---: | ---: | ---: | -| クラス数 | `2,777` | `1,099` | `1,676` | -| MONDOへのクロスリファレンスを含むクラス数 | `2154` | `892` | `1262` | +| クラス数/Number of disease | `2,777` | `1,099` | `1,676` | +| MONDOへのクロスリファレンスを含むクラス数/Link to MONDO | `2154` | `892` | `1262` | ## ライセンス CC-BY 4.0 | DBCLS From 5939b02a00846b14dfa33f16872cb936ad936185 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:46:42 +0900 Subject: [PATCH 6/7] Update README.md --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 880074f..618ccdb 100644 --- a/README.md +++ b/README.md @@ -35,12 +35,14 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca | クラス数/Number of disease | `2,777` | `1,099` | `1,676` | | MONDOへのクロスリファレンスを含むクラス数/Link to MONDO | `2154` | `892` | `1262` | -## ライセンス +## ライセンス/licens・ CC-BY 4.0 | DBCLS -## コンタクト -新しい用語のリクエストやクラスの修正依頼，オントロジーに関する問題点・疑問点の報告には，本リポジトリの Issue tracker をご利用ください． +## コンタクト/Contact +- 新しい用語のリクエストやクラスの修正依頼，オントロジーに関する問題点・疑問点の報告には，本リポジトリの Issue tracker をご利用ください． +- For requests to add new terms, request class modifications, or report issues or questions regarding the ontology, please use the [Issue tracker](https://github.com/aidrd/nando/issues) of this repository. + ## 出典/sources - 「概要、診断基準等」（厚生労働省）（https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000084783.html)
（2020年7月14日に利用） - 「臨床調査個人票」（厚生労働省）（https://www.mhlw.go.jp/stf/seisakunitsuite/bunya/0000084783.html)
（2020年7月14日に利用） From c31ec808dfe9db1042d53fbc2f8778b4fdc5a606 Mon Sep 17 00:00:00 2001 From: TAKATSUKI Terue <54526840+TerueTakatsuki@users.noreply.github.com> Date: Tue, 23 Apr 2024 15:48:12 +0900 Subject: [PATCH 7/7] Update README.md --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 618ccdb..b472c11 100644 --- a/README.md +++ b/README.md @@ -59,5 +59,6 @@ The Nanbyo Disease Ontology (NANDO) is a structured resource that organizes voca - 本オントロジーの構築に際してDDrareおよびRDVJを参照した． - 本オントロジーの構築にBioHackathonの成果を利用した． -- The construction of this ontology was informed by references to DDrare and RDVJ. The results from the BioHackathon were also utilized in building this ontology. +- The construction of this ontology was informed by references to DDrare and RDVJ. +- The results from the BioHackathon were also utilized in building this ontology.