Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error when migrating data from mysql to duckdb #567

Open
Arkronus opened this issue Dec 27, 2024 · 0 comments
Open

Error when migrating data from mysql to duckdb #567

Arkronus opened this issue Dec 27, 2024 · 0 comments

Comments

@Arkronus
Copy link

Hi! I'm trying to make PoC with pyairbyte and got some strange errors

Environment: Ubuntu 22, Python 3.11,

Errors

  1. When I run script, it complains about docker but continues to run
AirbyteSubprocessFailedError: Subprocess failed.
    Run Args: ['docker', 'run', '--rm', '-i', '--volume', '/home/aprytkov/test-airbyte/source-mysql:/local/', '--volume', '/tmp:/tmp', 'airbyte/source-mysql:latest', 'discover', '--config', '/tmp/tmp8hzu648g.json']
  1. Full log: https://gist.github.com/Arkronus/5c5c424d3c458c2a20f4011397453683

Here is my code

import airbyte as ab

def main():
    # connectors_list = ab.get_available_connectors()
    # print(f"Available connectors: {connectors_list}")
    
    source_name = 'source-mysql'
    
    mysql_source: ab.Source = ab.get_source(source_name, install_if_missing=True)
    
    # open mysql databse https://docs.rfam.org/en/latest/database.html
    mysql_source.set_config(
        config={
            "host":"mysql-rfam-public.ebi.ac.uk",
            'port': 4497,
            'database': 'Rfam',
            'username': 'rfamro',
            'replication_method': {
                'method': 'STANDARD'
            }
        }
    )
    
    streams = mysql_source.get_available_streams()
    print('Streams')
    print(streams)
    
    destination_name = 'destination-duckdb'

    duckdb_destination: ab.Destination = ab.get_destination(destination_name, install_if_missing=True)
    print(duckdb_destination.docs_url)
    duckdb_destination.set_config(
        config={
            'destination_path': 'db.duckdb'
        }
    )

    result = mysql_source.read(streams=['family','clan'])
    duckdb_destination.write(result)
    print("Load complete")

if __name__ == "__main__":
    main()
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant