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protein-site.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/pro/protein-site.owl#"
xml:base="http://purl.obolibrary.org/obo/pro/protein-site.owl"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:protege="http://protege.stanford.edu/plugins/owl/protege#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/pro/protein-site.owl">
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pro/resid-extras.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pro/protein-site-obo-imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pro/iao-imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pro/resid.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/bfo/2012-11-15-bugfix/bfo.owl"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000136 -->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/IAO_0000136">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001020"/>
</rdf:Description>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001004 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001004">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001005"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/PR_000018263"/>
<obo:IAO_0000232>Alan: Ugh FIXME</obo:IAO_0000232>
<rdfs:label xml:lang="en">within reference sequence of</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001011 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001011">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000170"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000029"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000040"/>
<rdfs:label xml:lang="en">is occupied by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001012 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001012">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000110"/>
<rdfs:label xml:lang="en">has site</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001020 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001020"/>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001021 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001021">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001020"/>
<rdfs:label xml:lang="en">described by</rdfs:label>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/PROXXX_204 -->
<owl:DatatypeProperty rdf:about="http://purl.obolibrary.org/obo/PROXXX_204">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#positiveInteger"/>
<rdfs:label>has ordinal position</rdfs:label>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/PROXXX_0001000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001000">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000029"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000177"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PR_000018263"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<obo:IAO_0000115>a three-dimensional immaterial part of an amino acid chain in which may be located either nothing or some part of a protein</obo:IAO_0000115>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">amino acid chain site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001001 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001000"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000170"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33708"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115>a protein site in which an amino acid residue is located</obo:IAO_0000115>
<obo:IAO_0000116>2014-07-24 Alan Ruttenberg: The boundary of such a site, is, necessarily, vague</obo:IAO_0000116>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">site of an amino acid residue in a protein</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001002">
<owl:equivalentClass>
<owl:Class>
<owl:intersectionOf rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001001"/>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001011"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001023"/>
</owl:Restriction>
</owl:intersectionOf>
</owl:Class>
</owl:equivalentClass>
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001001"/>
<obo:IAO_0000115>site of an amino acid residue that has undergone a molecular reaction that changed its chemical structure, hence changing the chemical structure of the protein of which it and its occupant are part</obo:IAO_0000115>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">site of post translationally modified amino acid residue</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001003 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/IAO_0000030"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001000"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115>a data item that specifies the position of the site of an amino acid residue </obo:IAO_0000115>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">amino acid site location description</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001005">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001003"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000136"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001001"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001004"/>
<owl:qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:qualifiedCardinality>
<owl:onClass rdf:resource="http://purl.obolibrary.org/obo/PR_000018263"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/PROXXX_204"/>
<owl:qualifiedCardinality rdf:datatype="http://www.w3.org/2001/XMLSchema#nonNegativeInteger">1</owl:qualifiedCardinality>
<owl:onDataRange rdf:resource="http://www.w3.org/2001/XMLSchema#positiveInteger"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">amino acid residue site location described as a numeric position on reference sequence</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001006 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001006">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PROXXX_0001003"/>
<obo:IAO_0000117>Alan Ruttenberg</obo:IAO_0000117>
<rdfs:label xml:lang="en">amino acid residue location described as position within a motif</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001018 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001018">
<rdfs:label xml:lang="en">molecule site</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001019 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001019">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PR_000018263"/>
<rdfs:label xml:lang="en">post translational modified protein</rdfs:label>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001020 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001020">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33708"/>
</owl:Class>
<!-- http://purl.obolibrary.org/obo/PROXXX_0001023 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001023">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CHEBI_33708"/>
<rdfs:label xml:lang="en">modified residue</rdfs:label>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotations
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/PROXXX_0001020">
<rdfs:label xml:lang="en">inverse of is about</rdfs:label>
</rdf:Description>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.2.5.20160517-0735) https://github.com/owlcs/owlapi -->