sashimi_plots_settings.txt

[plotting]
# Dimensions of figure to be plotted (in inches)
fig_width = 7
fig_height = 5
# Factor to scale down introns and exons by
intron_scale = 30
exon_scale = 4
# Whether to use a log scale or not when plotting
logged = False
font_size = 6

# Max y-axis 150
ymax = 200 

# Whether to plot posterior distributions inferred by MISO
show_posteriors = True

# Whether to show posterior distributions as bar summaries
bar_posteriors = False

# Whether to plot the number of reads in each junction
number_junctions = True

resolution = .5
posterior_bins = 40
gene_posterior_ratio = 5

# List of colors for read denisites of each sample
colors = [
    "#CC0011",
    "#CC0011",
    "#FF8800",
    "#FF8800"]

# Number of mapped reads in each sample
# (Used to normalize the read density for RPKM calculation)
coverages = [
    6830944,
    14039751,
    4449737,
    6720151]

# Bar color for Bayes factor distribution
# plots (--plot-bf-dist)
# Paint them blue
bar_color = "b"

# Bayes factors thresholds to use for --plot-bf-dist
bf_thresholds = [0, 1, 2, 5, 10, 20]