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visualize fMRI with pycortex #3

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yinxu1996 opened this issue Jul 10, 2024 · 1 comment

yinxu1996 commented Jul 10, 2024

Your work is inspiring. Could you share the code for visualizing the nsd 2D brain using pycortex? It has been troubling me for a long time.

Owner

aluo-x commented Sep 16, 2024

Hi,

Apologies for the delayed response. I'm planning on significantly cleaning up this repo soon and adding plotting code.

Are you referencing plotting pycortex using NSD?

If so I am using the exact command here:
https://github.com/ariaaay/NSD/blob/b5307511fd14307484262b414b3059b8ff3e44e7/code/make_pc_tree.py#L302

Except I am not setting the mask parameter (it is optional, I recommend you mask first by setting vol[mask] = np.nan).

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