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ImmuneData--Database

ImmuneData is a NoSQL document-oriented database created using Cloud Firestore Intro to Firestore or wiki of this git repo .

Details on Added Data

• InnateDB models

  • GraphXGML files downloaded from InnateDB for 22 pathways (11 Homo sapiens, 11 Mus musculus)
  • Scripts for all the cleaning of the files to updating on Firestore is in .ipynbfiles under names
    • test
    • test

• LI BTMs

• DC-Modules -- from Tmod package - updated

  • test description
    • test name

• Nature immunology review John Wherry, U penn, immunotherapy gene sets

• CELL MARKER DB

• Monaco et al 2019-- cell reports rna seq deconvolution data

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Future modeling

• scRNA seq---Pipeline (GitHub--pipeline--working) ---prediction --data sets ---- using GRN inference algorithms

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