README.md

Code and notes from Coursera Bioinformatics I course

These problems are also on Rosalind. Also includes some visualizations.

Setup

$ virtualenv ./venv
$ source venv/bin/activate
$ pip install -r requirements.txt

Running

Then either launch the visualizations server:

$ ./server.sh # To launch dash/plotly server

or run the files with code & tests for each week:

$ source venv/bin/activate
$ python3 week1.py #to run week1/2/3...
$ python3 lib.py #run tests

Todos

• fix tests to not hardcode file path but not run tests from imported files.