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Combined visualization of domains and segmented cells #276

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lzy-9865 opened this issue Oct 15, 2024 · 2 comments
Open

Combined visualization of domains and segmented cells #276

lzy-9865 opened this issue Oct 15, 2024 · 2 comments
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@lzy-9865
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Hi developer,I had the cluster result using bin80,but while I was applying function st.pl.spatial_domainsto my data,I set the parameter bin_size=80 and got nothing,then I tried bin_size=1and got a barely satisfying contour image.I followed the steps in the tutorials but found that when scale_factor=1and adata_cellbin.obsm['spatial_bin80']=adata_cellbin.obsm['spatial']//80,nothing showed up.Then I tried scale_factor=0.02and adata_cellbin.obsm['spatial_bin80']=adata_cellbin.obsm['spatial']`,I got an image with domain background and cell dots not precisely alligned.How can I alligned my domain(bin80)and cellbin data?(plus I am using Stereo-Seq)
30841728959466_ pic
![30851728959579_ pic](https://github.com/user-attachments/assets/a8
30861728959603_ pic
b37889-8dfb-4440-a3db-1cae5dc47b38)

@lzy-9865
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30851728959579_ pic

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This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 14 days

@github-actions github-actions bot added the Stale label Feb 13, 2025
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