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how to create spateo object using gef from SAW? or adata converted from stereopy object? #281

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xwangda opened this issue Nov 12, 2024 · 1 comment

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@xwangda
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xwangda commented Nov 12, 2024

Thank you so much for developing this brilliant tool.
I briefly went through the tutorial and found there is no guide for creating a spateo object using .gef data from saw output.
I tried to use spateo.pl.space while the object converted from stereopy does not have the _type record, and reported me the error below.
KeyError: '__type'
Could you provide a solution for creating a spateo compatible object using either .gef file or converted stereopy object? Thank you so much!

Best,
xwangda

@melop
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melop commented Nov 13, 2024

I have the same question, is there any documentation about importing data from SAW version 8.1.1? I don't seem to find any *_all_bin1.txt.gz from the output of SAW. Perhaps the output format changed between SAW versions?

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