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question about creating a CosMx object #298

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CenFWNW opened this issue Dec 10, 2024 · 0 comments
Open

question about creating a CosMx object #298

CenFWNW opened this issue Dec 10, 2024 · 0 comments

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@CenFWNW
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CenFWNW commented Dec 10, 2024

Hi I have been trying to create a CosMx object using the spateo.io.nanostring.read_nanostring function. I firstly encountered an error
image
I fixed it by rounding the coordinates to integers.
I then encountered the following error:
image
Not sure if this error raised by the argument label_columns, buy my cell names are strings in the format c_1_1_1. Also do you have a good guideline of how to use spateo on CosMx data?

Thank you so much!

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