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slxc

SLURM in Linux Containers

The set of scripts to easily deploy SLURM cluster on one machine using Linux Containers. The goal is SLURM development mostly. Any other ideas/usages :)?

Prerequisites: screen tool.

  1. Install Linux Containers (LXC)
  • In Linux Mint (and probably Ubuntu) need the following packages:
    • lxc-dev
    • lxc-utils
  1. Configure LXC (the following is Ubuntu/Mint specific, for other distributions check its manuals to use the proper paths and configuration files names):
  • Setup LXC networking (/etc/default/lxc-net):
    • USE_LXC_BRIDGE="true"
    • LXC_DHCP_CONFILE=/etc/lxc/dnsmasq.conf
    • LXC_DOMAIN="lxc"
  • Change /etc/lxc/dnsmasq.conf adding following line:
    • conf-file=$SLXC_PATH/build/dnsmasq.conf
  • If facing problems, check https://github.com/lxc/lxc/pull/285/files (look in /etc/apparmor.d/abstractions/lxc/start-container)
  1. Install Munge in MUNGE_PATH (under someuser). NOTE! that munge-0.5.11 has problems with user-defined prefix installation (see https://code.google.com/p/munge/issues/detail?id=34 for the details). In the mentioned issue report you may find the patch that temporally fixes this problem. Or you can use more recent versions that have this problem fixed.
  2. [Optional] If the SLURM_USER is not root and you plan to submit jobs as user USER1 != SLURM_USER:
  • Apply the patch from SLURM directory:
    • patch -p1 < <slxc_path>/patch/start_from_user.patch
  1. Install SLURM in SLURM_PATH (under someuser). Make additional directorys in slurm's prefix:
  • mkdir $SLURM_PATH/var $SLURM_PATH/etc
  1. Configure SLURM and put its configuration in $SLURM_PATH/etc/slurm.conf. While configuring select your favorite domain names for the frontend and compute nodes. Here we will use frontend and cnX.
  2. Put SLURM and Munge installation paths to $SLXC_PATH/slxc.conf.
  3. Set SLURM_USER to someuser in $SLXC_PATH/slxc.conf.
  4. Create cluster machines with slxc-new-node.sh. The only argument of slxc-new-node.sh is machine hostname. NOTE that you must use the same frontend/compute nodes names as in $SLURM_PATH/etc/slurm.conf.
  • Create frontend first (let's call it "frontend" for example ):
    • $SLXC_PATH/slxc-new-node.sh frontend
  • Create node machines (cn1, cn2, ..., cnN):
    • $ for i in $(seq 1 N); do $SLX_PATH/slxc-new-node.sh cn$i; done
  1. [Optional] Add Munge and SLURM installation paths to your PATH environment variable. And export SLURM_CONF=$SLURM_PATH/etc/slurm.conf to let sinfo, sbatch and others know how to reach slurmctld.
  2. Restart lxc-net service (for Ubuntu/Mint):
  • $ sudo service lxc-net restart
  1. [Optional] If the SLURM_USER is not root and you plan to submit jobs as user USER1 != SLURM_USER:
  • Setup SLURM capabilities:
    • $ sudo ./slurm-set-capabilities.sh
  1. Start your cluster:
  • $ sudo ./slxc-run-cluster.sh
  1. Verify that everything is OK (both tools should show all your virtual "machines" running):
  • $ sudo screen -ls
  • $ sudo lxc-ls --active
  1. Now you can attach to any machine with
  • $ sudo lxc-attach -n $nodename
  1. [Optional] If you plan use PMIx plugin, then required to be set the temporary directory of PMIx through value of environment SLURM_PMIX_TMPDIR. This path shouldn't be equal to shared directory between virtual containers. The env required to set before srun use.
  • Set PMIx tmp dir:
    • $ export SLURM_PMIX_TMPDIR=$SLURM_PATH/var/spool
  1. To shutdown your cluster use
  • $ ./slxc-stop-cluster.sh
  • NOTE: that it may take a while. You can speedup this process by setting LXC_SHUTDOWN_TIMEOUT in /etc/default/lxc (for Ubuntu and Mint)

That seems to be all. Enjoy!