.gitmodules

[submodule "tools/bwa"]
	path = tools/bwa
	url = https://github.com/arun-sub/bwa.git
	branch = master
[submodule "tools/GKL"]
	path = tools/GKL
	url = https://github.com/arun-sub/GKL.git
	branch = pv_c_interface
[submodule "tools/bwa-mem2"]
	path = tools/bwa-mem2
	url = https://github.com/bwa-mem2/bwa-mem2.git
[submodule "tools/minimap2"]
	path = tools/minimap2
	url = https://github.com/arun-sub/minimap2.git
[submodule "tools/minimap2-acceleration"]
	path = tools/minimap2-acceleration
	url = https://github.com/arun-sub/minimap2-acceleration.git
[submodule "tools/spoa"]
	path = tools/spoa
	url = https://github.com/arun-sub/spoa.git
[submodule "tools/abPOA"]
	path = tools/abPOA
	url = https://github.com/arun-sub/abPOA.git
[submodule "tools/racon"]
	path = tools/racon
	url = https://github.com/arun-sub/racon.git
[submodule "tools/Clair"]
	path = tools/Clair
	url = https://github.com/Yufeng98/Clair.git
[submodule "tools/medaka"]
	path = tools/medaka
	url = https://github.com/arun-sub/medaka.git
[submodule "tools/Platypus"]
	path = tools/Platypus
	url = https://github.com/arun-sub/Platypus.git
[submodule "tools/htslib"]
	path = tools/htslib
	url = https://github.com/arun-sub/htslib.git
[submodule "tools/bonito"]
	path = tools/bonito
	url = https://github.com/TimD1/bonito.git
[submodule "tools/Flye"]
	path = tools/Flye
	url = https://github.com/arun-sub/Flye.git
[submodule "benchmarks/grm"]
	path = benchmarks/grm
	url = https://github.com/arun-sub/plink-ng.git