Depend on and export InferenceObjects (#220)

* Add InferenceObjects as dependency * Remove InferenceObjects module * Load OrderedCollections * Increment version number * Add module to docs build * Separate out InferenceObjects exports
arviz-devs · Aug 17, 2022 · 50950ea · 50950ea · sethaxen · Aug 17, 2022
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Showing 22 changed files with 18 additions and 1,737 deletions.
diff --git a/Project.toml b/Project.toml
@@ -1,13 +1,14 @@
 name = "ArviZ"
 uuid = "131c737c-5715-5e2e-ad31-c244f01c1dc7"
 authors = ["Seth Axen <[email protected]>"]
-version = "0.6.2"
+version = "0.6.3"
 
 [deps]
 Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 DimensionalData = "0703355e-b756-11e9-17c0-8b28908087d0"
+InferenceObjects = "b5cf5a8d-e756-4ee3-b014-01d49d192c00"
 LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
 Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a"
 OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
@@ -22,6 +23,7 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 Conda = "1.0"
 DataFrames = "0.20, 0.21, 0.22, 1.0"
 DimensionalData = "0.20, 0.21"
+InferenceObjects = "0.1"
 LogExpFunctions = "0.2.0, 0.3"
 OrderedCollections = "1"
 PSIS = "0.2, 0.3, 0.4, 0.5"

diff --git a/docs/make.jl b/docs/make.jl
@@ -31,7 +31,7 @@ download_asset("ArviZ_white.png", "logo-dark.png")
 download_asset("favicon.ico")
 
 makedocs(;
-    modules=[ArviZ, PSIS],
+    modules=[ArviZ, InferenceObjects, PSIS],
     sitename="ArviZ.jl",
     pages=[
         "Home" => "index.md",

diff --git a/src/ArviZ.jl b/src/ArviZ.jl
@@ -34,14 +34,12 @@ import StatsBase: summarystats
 import Markdown: @doc_str
 import PyCall: PyObject
 
-include("InferenceObjects/InferenceObjects.jl")
-
-using .InferenceObjects
-import .InferenceObjects: convert_to_inference_data, namedtuple_of_arrays
+using InferenceObjects
+import InferenceObjects: convert_to_inference_data, namedtuple_of_arrays
 # internal functions temporarily used/extended here
-using .InferenceObjects:
+using InferenceObjects:
     attributes, flatten, groupnames, groups, hasgroup, rekey, setattribute!
-import .InferenceObjects: namedtuple_of_arrays
+import InferenceObjects: namedtuple_of_arrays
 
 # Exports
 
@@ -79,20 +77,22 @@ export bfmi, ess, rhat, mcse
 
 ## Stats utils
 export autocov, autocorr, make_ufunc, wrap_xarray_ufunc
-## Dataset
-export Dataset, convert_to_dataset, namedtuple_to_dataset
 
-## InferenceData
-export InferenceData
+## InferenceObjects
+export InferenceObjects,
+    Dataset,
+    InferenceData,
+    convert_to_dataset,
+    convert_to_inference_data,
+    from_namedtuple,
+    namedtuple_to_dataset
 
 ## Data
-export convert_to_inference_data,
-    extract_dataset,
+export extract_dataset,
     load_arviz_data,
     to_netcdf,
     from_json,
     from_netcdf,
-    from_namedtuple,
     from_dict,
     from_cmdstan,
     from_mcmcchains,

diff --git a/src/InferenceObjects/InferenceObjects.jl b/src/InferenceObjects/InferenceObjects.jl
diff --git a/src/InferenceObjects/convert_dataset.jl b/src/InferenceObjects/convert_dataset.jl
diff --git a/src/InferenceObjects/convert_inference_data.jl b/src/InferenceObjects/convert_inference_data.jl
diff --git a/src/InferenceObjects/dataset.jl b/src/InferenceObjects/dataset.jl